Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    25   0.62 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   3.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   3.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   3.3  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 280 KTAVVTKLFPTRSHTVAAQGG 342
           + A  TKL P R HTV  +GG
Sbjct: 31  RPAANTKLGPQRIHTVRTRGG 51


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 64  MKAAVSRSPASLASYLYRNIHVAA---SGATSKDASVTTNMTKAYTVID 201
           M+A V+R P     Y Y+  H  +   SG ++K      +   AY V+D
Sbjct: 427 MQAKVNRQPVWFYYYTYKGAHSISEIMSGTSNKYG--VCHADDAYMVVD 473


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 347 LIPPCAATVCDLVGNNLVTTAVL 279
           L+PP     CD+ G  L T   L
Sbjct: 365 LLPPGVCYTCDVCGKTLSTKLTL 387


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 64  MKAAVSRSPASLASYLYRNIHVAA---SGATSKDASVTTNMTKAYTVID 201
           M+A V+R P     Y Y+  H  +   SG ++K      +   AY V+D
Sbjct: 427 MQAKVNRQPVWFYYYTYKGAHSISEIMSGTSNKYG--VCHADDAYMVVD 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,969
Number of Sequences: 438
Number of extensions: 2924
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)