Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66760.1 68418.m08415 succinate dehydrogenase [ubiquinone] fl...   157   4e-39
At2g18450.1 68415.m02147 succinate dehydrogenase [ubiquinone] fl...   148   3e-36
At5g14760.1 68418.m01732 L-aspartate oxidase family protein simi...    41   6e-04
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    31   0.47 
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    31   0.47 
At3g19280.1 68416.m02445 glycoprotein 3-alpha-L-fucosyltransfera...    28   4.4  
At5g40480.1 68418.m04909 expressed protein ; expression supporte...    27   7.7  
At2g40600.1 68415.m05008 appr-1-p processing enzyme family prote...    27   7.7  

>At5g66760.1 68418.m08415 succinate dehydrogenase [ubiquinone]
           flavoprotein subunit, mitochondrial / flavoprotein
           subunit of complex II identical to SP|O82663 Succinate
           dehydrogenase [ubiquinone] flavoprotein subunit,
           mitochondrial (EC 1.3.5.1) (FP) (Flavoprotein subunit of
           complex II) {Arabidopsis thaliana}
          Length = 634

 Score =  157 bits (381), Expect = 4e-39
 Identities = 76/137 (55%), Positives = 92/137 (67%)
 Frame = +1

Query: 82  RSPASLASYLYRNIHVAASGATSKDASVTTNMTKAYTVIDHKHDXXXXXXXXXXXXXXXX 261
           R+PAS  S L+    V+ S  +   ++ +T+   +YT++DH +D                
Sbjct: 10  RAPASKTSSLFDG--VSGSRFSRFFSTGSTDTRSSYTIVDHTYDAVVVGAGGAGLRAAIG 67

Query: 262 XVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAI 441
             + GF TA +TKLFPTRSHTVAAQGGINAALGNM ED W WHMYDTVKGSDWLGDQDAI
Sbjct: 68  LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAI 127

Query: 442 HYMTKEAPHAVIELDNY 492
            YM +EAP AVIEL+NY
Sbjct: 128 QYMCREAPKAVIELENY 144


>At2g18450.1 68415.m02147 succinate dehydrogenase [ubiquinone]
           flavoprotein subunit, mitochondrial, putative /
           flavoprotein subunit of complex II, putative strong
           similarity to SP|O82663 Succinate dehydrogenase
           [ubiquinone] flavoprotein subunit, mitochondrial (EC
           1.3.5.1) (FP) (Flavoprotein subunit of complex II)
           {Arabidopsis thaliana}
          Length = 632

 Score =  148 bits (358), Expect = 3e-36
 Identities = 66/103 (64%), Positives = 74/103 (71%)
 Frame = +1

Query: 184 AYTVIDHKHDXXXXXXXXXXXXXXXXXVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGN 363
           +YT++DH +D                  + GF TA +TKLFPTRSHTVAAQGGINAALGN
Sbjct: 40  SYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN 99

Query: 364 MEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNY 492
           M  D W WHMYDTVKGSDWLGDQDAI YM +EAP AVIEL+NY
Sbjct: 100 MSVDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENY 142


>At5g14760.1 68418.m01732 L-aspartate oxidase family protein similar
           to L-aspartate oxidase, Escherichia coli [SP|P10902];
           contains Pfam profiles PF00890 FAD binding domain,
           PF02910 Fumarate reductase/succinate dehydrogenase
           flavoprotein C-terminal domain
          Length = 651

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 25/66 (37%), Positives = 36/66 (54%)
 Frame = +1

Query: 286 AVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAP 465
           AV+TK  P  S+T  AQGG++A L  +  DS   HM DT+     L D++ +  +  E P
Sbjct: 110 AVITKDEPHESNTNYAQGGVSAVLCPL--DSVESHMRDTMVAGAHLCDEETVRVVCTEGP 167

Query: 466 HAVIEL 483
             + EL
Sbjct: 168 ERIREL 173


>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
 Frame = +1

Query: 19  TVLWVRTESSIMSTLMKAA-VSRSPASLAS---YLYRNIH--VAASGATSKDASVTTNMT 180
           T L  R+E  ++S + K A   R PA++A+    LY N    V +SGA+  D +V +NM+
Sbjct: 97  TFLDARSEQDLLSGIKKEAEAGRLPANVAAGMEELYWNYKNAVLSSGASRADETVVSNMS 156

Query: 181 KAY 189
            A+
Sbjct: 157 VAF 159


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
 Frame = +1

Query: 19  TVLWVRTESSIMSTLMKAA-VSRSPASLAS---YLYRNIH--VAASGATSKDASVTTNMT 180
           T L  R+E  ++S + K A   R PA++A+    LY N    V +SGA+  D +V +NM+
Sbjct: 97  TFLDARSEQDLLSGIKKEAEAGRLPANVAAGMEELYWNYKNAVLSSGASRADETVVSNMS 156

Query: 181 KAY 189
            A+
Sbjct: 157 VAF 159


>At3g19280.1 68416.m02445 glycoprotein 3-alpha-L-fucosyltransferase
           A / FucTA / core alpha-(1,3)-fucosyltransferase (FUT11)
           identical to Glycoprotein 3-alpha-L-fucosyltransferase A
           (Core alpha-(1,3)-fucosyltransferase)(Fuc-T C3) (FucTA)
           (FucT1) (AtFUT11)(SP:Q9LJK1) from [Arabidopsis
           thaliana]; contains Pfam profile PF00852: Fucosyl
           transferase; identical to cDNA
           alpha1,3-fucosyltransferase (FucTA) GI:13992482
          Length = 501

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 477 DYCMRRFFSHVVNGILISKPVGTFNCVIHMPEPTVFLHIAQ 355
           DY   +FF  +V G  +   VG  N     P P  FLHI Q
Sbjct: 276 DYVTEKFFQSLVAGS-VPVVVGAPNIEEFAPSPDSFLHIKQ 315


>At5g40480.1 68418.m04909 expressed protein ; expression supported by
            MPSS
          Length = 1919

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -1

Query: 401  VSYICQSQLSSSILPKAALIPPCAATVCDLVGNNLVTTAVLNPSWTXXXXXXXXXXXXPI 222
            + Y  +SQ S+ +LP+ +      +T+ D V   LV+T  + P +              +
Sbjct: 917  IDYSFKSQYST-LLPQGS-----ESTLTDAVRLQLVSTLRVTPEFNLVFFNPNAKVNLSM 970

Query: 221  TNASCLWSITV 189
            T  SCLW   V
Sbjct: 971  TGGSCLWEAVV 981


>At2g40600.1 68415.m05008 appr-1-p processing enzyme family protein
           contains Pfam domain PF01661: Appr-1-p processing enzyme
           family
          Length = 257

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 55  STLMK-AAVSRSPASLASYLYRNIHVAASGATSKDASVTT 171
           ST+++  + S S ASL S+   N H  AS +++  + +TT
Sbjct: 21  STILRPTSSSSSRASLISFAVNNFHTIASSSSTLSSRLTT 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,107,602
Number of Sequences: 28952
Number of extensions: 207542
Number of successful extensions: 519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)