Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305B12f
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 27 1.6
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 26 2.9
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.8
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 26 3.8
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 26 3.8
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 26 3.8
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 26 3.8
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 25 5.0
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 6.7
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 25 6.7
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +2
Query: 95 KEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPL 268
K+ KK+++ + + L K + + + + + D+D + N K G + S NP++P+
Sbjct: 354 KKEKKKKKVLSISLSGKKVVVDQKEASSESSDEDQDELDNLTKVEGQSHSH-NPKAPV 410
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 284 NDEEYCGDYDQFDLANEVDTLEQFLKL 364
N E YD +D ++VD+LE+ LKL
Sbjct: 455 NQEWLHNFYDAYDALDDVDSLERALKL 481
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 234 PPEDLALFCMKSLSD--SLPGSVMSMTSYFIF 145
P +D+ C+K L SLPG + +YF+F
Sbjct: 497 PYDDIRNLCLKILLSYKSLPGFISDSDAYFLF 528
>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +2
Query: 143 KNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDE 292
++++YE I EP + K QN G + P P Q+ DE
Sbjct: 133 ESVQYEEIVFNEPFEYTYKLLSQNPIGDGHGLAVESEPDHPFSQQLEQDE 182
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 152 KYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPN 253
KY+ D E GR K+ +++ A S ++ DPN
Sbjct: 522 KYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPN 555
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 176 EPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEE 295
E G + + +N+ + TVS +P LPP N+ E
Sbjct: 442 EQGNSNAPELNKNDYEGEEITVSQKSPSPSLPPNELNEPE 481
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 215 NAKSSGGTVSDPNPRSPLPPQMFNDEEY 298
NAK S G + PLPPQ FN +Y
Sbjct: 394 NAKQSSGKLG------PLPPQSFNSSDY 415
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 508 VMCLLHHFLLFRCSFCFLGGFFSYFSI 428
++CL F+ RC F +GG FSY +I
Sbjct: 7 LICLF--FIFKRCVFTVIGGEFSYDNI 31
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 176 EPGRESDKDFMQNNAKSSGGTVSDPN--PRSPLPPQMFNDEEYC 301
EP + D + N SS P+ PRSP ++FN + C
Sbjct: 135 EPKEKPDASSINTNRSSSDNGFLTPSSSPRSPSCSRVFNAVQLC 178
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 185 RESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEE 295
RES+ NNA++S T+ + +P +FNDEE
Sbjct: 393 RESEATLGVNNAQTSRSTIPEEDP-------LFNDEE 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,597
Number of Sequences: 5004
Number of extensions: 31252
Number of successful extensions: 104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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