Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305B12f
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1454 - 27222004-27222296,27222389-27222500 36 0.019
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41... 33 0.18
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 29 2.2
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 28 3.8
03_05_0292 + 22846273-22846377,22847161-22847823 28 5.1
04_04_0149 - 23123020-23123034,23123100-23123143,23123916-231239... 27 6.7
02_02_0089 - 6668179-6668316,6668386-6668565,6668648-6668729,666... 27 6.7
10_08_0534 + 18595520-18595828,18595917-18597149 27 8.8
02_04_0589 - 24117688-24119282,24119881-24119908,24120004-241200... 27 8.8
02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824 27 8.8
>08_02_1454 - 27222004-27222296,27222389-27222500
Length = 134
Score = 35.9 bits (79), Expect = 0.019
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 221 KSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEV-DTLEQF 355
K GG P R LPPQ ++ + CGD+ DL +EV + L+QF
Sbjct: 13 KKKGGVAKKPISRKKLPPQNCSESQDCGDH---DLGDEVEEQLQQF 55
>01_01_0055 -
415666-415767,416510-416602,416776-416850,416920-417071,
417147-417267,417567-418289,418408-418489,418575-418681,
418757-418822,418941-419057,419157-419402
Length = 627
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 62 VKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNA 220
+K++ISG+ NKE + V + + N++ + ++ PG+ SD+D A
Sbjct: 361 MKLFISGVVHNKEDAGAKSYVRVPAEINNLEKDSFELYIPGKGSDRDLADTKA 413
>04_04_1390 -
33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 143 KNIKYEVIDITEP----GRESD-KDFMQNNAKSSGGTVSDPNPRS 262
K + E++ T+ G E KDF+ N K G +VSDP RS
Sbjct: 10 KEVLVEIVRFTQKNGLKGAEGGWKDFLARNDKKFGASVSDPKKRS 54
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 200 DFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDL 325
D+ +NNA + V DP PR P+ F D + +FD+
Sbjct: 60 DYAKNNAWEALFHVDDPGPRVPIAKGKFLDVNQALEVVRFDI 101
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 279 ICGGSGERGFGSLTVPPEDLALFCMKSLSDSLPGSV 172
+CGG G RG GS T D A CM ++ G+V
Sbjct: 177 MCGGGGRRGRGSSTQGGGD-ACGCMAEFAEVADGAV 211
>04_04_0149 -
23123020-23123034,23123100-23123143,23123916-23123937,
23124003-23124068,23125100-23125734,23125966-23126035,
23126150-23126209
Length = 303
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 164 IDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQ 316
I I + G+E+ + + G+++ P+P PLP + + GD ++
Sbjct: 55 IGIVKDGKEAKASTSPTGTEPNAGSMTVPSPHPPLPRRRLDVRSKGGDPEE 105
>02_02_0089 -
6668179-6668316,6668386-6668565,6668648-6668729,
6669317-6669405,6669503-6669580,6670502-6670559,
6670727-6670956,6671174-6671318,6671417-6671458,
6671681-6671853
Length = 404
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 251 NPRSPLPPQMFNDEEY----CGDYDQFDLANEVDTLEQFLKL 364
NPR+ P Q+FN+E + GD + D T+E FL++
Sbjct: 95 NPRNNYPAQVFNNENHQLNLYGDNVEVDYRGYEVTVENFLRV 136
>10_08_0534 + 18595520-18595828,18595917-18597149
Length = 513
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 37 EKYLIKHGCQNLYQWHFWQQGGEETSAAGPDDFRLKKYK 153
EK L K C NL WH + G+ AG + L+ ++
Sbjct: 240 EKVLEKASCNNLMSWHSFAIVGKVFMKAGMQERALQAFQ 278
>02_04_0589 -
24117688-24119282,24119881-24119908,24120004-24120089,
24120196-24120220,24121188-24121326,24122344-24122567,
24122674-24122691
Length = 704
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 76 QWHFWQQGGEETSAAGPDDFRLKKYK 153
QW + GG+ T G +D++ K+Y+
Sbjct: 118 QWGRGRSGGQMTEVTGREDYQRKRYR 143
>02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824
Length = 613
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 200 DFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDY 310
D+M N +SS G DPN + P CG++
Sbjct: 180 DYMINQTESSHGGAEDPNTNTNTNPDPMLLRRRCGNF 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,970,692
Number of Sequences: 37544
Number of extensions: 208188
Number of successful extensions: 659
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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