Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B12f
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42854| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   9e-12
SB_57494| Best HMM Match : DUF1213 (HMM E-Value=5.7)                   31   0.74 
SB_52107| Best HMM Match : DUF833 (HMM E-Value=1.6e-09)                29   1.7  
SB_30744| Best HMM Match : UCH (HMM E-Value=0.22)                      29   3.0  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        29   3.0  
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)                 27   6.9  
SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07)                   27   6.9  
SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_20780| Best HMM Match : DUF854 (HMM E-Value=5.1)                    27   9.1  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           27   9.1  

>SB_42854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
 Frame = +2

Query: 62  VKIYISGISGNKEVKKRQQRVLMILDS-KNIKYEVIDITEPGRESDKDFMQNNAKSSGGT 238
           + +YIS  S N ++KK+Q  + M+L S  +I+ EV+DI+      DK  M+         
Sbjct: 6   ITVYISRQSANNQMKKQQNWIDMVLKSVTDIEVEVVDISVDPELKDK--MR--------- 54

Query: 239 VSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTLEQFLKL 364
            +  N  + LPPQ+FN E+YCG YD+   ANE  TLE+FLKL
Sbjct: 55  -ALMNDETALPPQIFNGEQYCGGYDELFNANEDGTLEEFLKL 95


>SB_57494| Best HMM Match : DUF1213 (HMM E-Value=5.7)
          Length = 159

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 209 QNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTLEQFL 358
           + +AKSS  T   P+ ++PL     +++E   DYD+   +     +E++L
Sbjct: 89  EKDAKSSKSTGDPPSDKAPLTATTSDNQETVKDYDRKSTSGSKKPMEKYL 138


>SB_52107| Best HMM Match : DUF833 (HMM E-Value=1.6e-09)
          Length = 624

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 92  NKEVKKRQQRVLMILDS--KNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSP 265
           NK++ + +QR+   + S  + +++   D T P R   K  +Q N ++    ++   PR+ 
Sbjct: 387 NKKLSEEKQRLESRISSIEEKLRFSETDYTPPRR---KQSLQRNEENERSRIAGNEPRNA 443

Query: 266 LPPQMFND 289
             P+ F D
Sbjct: 444 NTPRSFQD 451


>SB_30744| Best HMM Match : UCH (HMM E-Value=0.22)
          Length = 533

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 23/114 (20%), Positives = 47/114 (41%)
 Frame = +2

Query: 20  CHFTILKNTLSNMVVKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDK 199
           C F +L   L N +++   S +S  K  KK++Q         ++K ++  +  PGR+   
Sbjct: 38  CVFPLLGGRLENYIIQRKASEMSNIKRKKKKKQ--------PSLKQKLDAVWIPGRQEPC 89

Query: 200 DFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTLEQFLK 361
              +  A +     +   P++P P       E C       +  E  + E++++
Sbjct: 90  ASSKEGASTCSLKSTSSLPKAPSPYSGNKFLEVCDSLSDVPMETEHCSFEEYIQ 143


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 239 VSDPNPRSPLPPQMFNDEEYCGDYDQF 319
           ++D  P  P+PP +F+D++   D D F
Sbjct: 494 LTDEPPSKPIPPPLFDDDDEDDDIDWF 520


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 191 SDKDFMQNNAKSSGGTVSD-PNPRSPLPPQM 280
           +   +++NN K + GT  D P P +P PP M
Sbjct: 76  NSNQYVKNNCKKTCGTCGDPPPPATPPPPTM 106


>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
          Length = 1020

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 107 KRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQM 280
           +RQQ  ++ L+ +  + +    +  G +   + MQ NA   G   + P    P PPQ+
Sbjct: 89  QRQQTTIISLNQRLRELKKYQKSSIGEDVSVEHMQPNAHRLGPADTRPGVAHPRPPQL 146


>SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07)
          Length = 769

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 134 LDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPL 268
           LD ++ K +  + T        D  +  ++SS  + SD NPR+P+
Sbjct: 529 LDDRSAKQDKTNKTRKATVEKVDVAETPSESSDDSDSDSNPRNPM 573


>SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
 Frame = +2

Query: 170  ITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMF---NDEEYCGD----YDQFDLA 328
            I +P + S  DF    A + G + + P+P    PP  F   +DEE   D    YDQ D+ 
Sbjct: 844  INQPVQISAYDFNTVMA-TDGVSPNFPSPPEEHPPGDFEKADDEELSEDEIIDYDQEDMR 902

Query: 329  NEVDTLEQFLK 361
                T++Q+LK
Sbjct: 903  LLQSTMQQYLK 913


>SB_20780| Best HMM Match : DUF854 (HMM E-Value=5.1)
          Length = 179

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 284 NDEEYCGDYDQFDLANEVDTLEQF 355
           +D+++CGDYD+ D   + D+ + +
Sbjct: 105 DDDDHCGDYDEHDDDTDNDSKDDY 128


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 209  QNNAKSSGGTVSDPNPRSPLPPQMFNDEE 295
            Q+    + GT++DPNP+ P  P    +++
Sbjct: 1304 QHRCALTCGTITDPNPKDPYIPDKLPEDD 1332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,243,989
Number of Sequences: 59808
Number of extensions: 219258
Number of successful extensions: 698
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)