Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B12f
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-1|CAB60842.2|  132|Caenorhabditis elegans Hypothetical ...    89   1e-18
Z82264-6|CAB05157.1|  214|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AC006761-4|AAL32243.1|  498|Caenorhabditis elegans Hypothetical ...    29   1.5  
AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z96047-8|CAC42278.1|  507|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z96047-7|CAB09413.1|  561|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81492-3|CAB04030.1|  382|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z83125-5|CAB05622.2|  362|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AL132876-1|CAB60842.2|  132|Caenorhabditis elegans Hypothetical
           protein Y105E8A.1 protein.
          Length = 132

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 44/101 (43%), Positives = 62/101 (61%)
 Frame = +2

Query: 62  VKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTV 241
           +K+Y++  + N E K R QR LMILD   I ++ IDIT+P     + FM+ NA   G   
Sbjct: 4   LKVYVASATANPETKYRVQRTLMILDGLGIPFDSIDITKPEHAEQRRFMRENASKKG--- 60

Query: 242 SDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTLEQFLKL 364
             PN  + LPPQ F ++EY GDY+ FD + E DT+ +FL+L
Sbjct: 61  --PN-GAVLPPQFFYEDEYLGDYEDFDTSVEADTITEFLRL 98


>Z82264-6|CAB05157.1|  214|Caenorhabditis elegans Hypothetical
           protein C49C3.12 protein.
          Length = 214

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 71  YISGISGNKEVKKRQQRVLMILDSKNIK 154
           ++SGI  N E +  +++ L ILD KNIK
Sbjct: 56  HLSGIESNSEKRYVEEQTLSILDDKNIK 83


>Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical
           protein R07B5.9 protein.
          Length = 657

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 131 ILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNP 256
           +LD  NI+ E  +  EPG  +     +        T S+PNP
Sbjct: 22  VLDKSNIREETPEDDEPGPSTKPSGKRQRGNKCNNTESEPNP 63


>AC006761-4|AAL32243.1|  498|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4a protein.
          Length = 498

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 270 GSGERGFGSLTVPPEDLALFCMKSLSDSLPGSVMSMTSY 154
           GSG    G   +P  ++AL  + S  D LPG V++MT++
Sbjct: 4   GSGGWAGGEACLPAVEMALKDVNSRLDILPGYVLNMTNH 42


>AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4b protein.
          Length = 860

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 270 GSGERGFGSLTVPPEDLALFCMKSLSDSLPGSVMSMTSY 154
           GSG    G   +P  ++AL  + S  D LPG V++MT++
Sbjct: 4   GSGGWAGGEACLPAVEMALKDVNSRLDILPGYVLNMTNH 42


>AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical
           protein F46E10.10c protein.
          Length = 181

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 52  KHGCQNLYQWHFWQQGGEETSAAGPDD 132
           K  C +++ WHF  + G+  S A P D
Sbjct: 94  KAACDHIHDWHFGTKAGQFVSMAVPSD 120


>AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical
           protein F46E10.10a protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 52  KHGCQNLYQWHFWQQGGEETSAAGPDD 132
           K  C +++ WHF  + G+  S A P D
Sbjct: 249 KAACDHIHDWHFGTKAGQFVSMAVPSD 275


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 167  DITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEV 337
            D  +P  ESD+  ++   + +G   + P    P P  + ++E    + D  D AN V
Sbjct: 1105 DHQKPDEESDESLVREYNEEAGYAYTLPRKNKPAPQAVEDNETSESEEDDEDAANRV 1161


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 173  TEPGRESDKDFMQNNAKSSGGTVSDPNPRSP 265
            + P RE          K SGG++SDP PR P
Sbjct: 2576 SRPDREQPNGETTVIKKVSGGSISDPTPRLP 2606


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +2

Query: 98  EVKKRQQRVLMILDSKNIKYEVIDITEPG----RESDKDFMQ-NNAKSSGGTVSDPNPRS 262
           E  +RQ R ++ L    +K    D T+      +E+D +  + NN + +    S+P P  
Sbjct: 762 EAGRRQLREILGLSPDKVKPNSDDKTKTSVRERKETDGEPSEDNNTQKAAPIASNPPPPP 821

Query: 263 PLPP 274
           PLPP
Sbjct: 822 PLPP 825


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +2

Query: 98  EVKKRQQRVLMILDSKNIKYEVIDITEPG----RESDKDFMQ-NNAKSSGGTVSDPNPRS 262
           E  +RQ R ++ L    +K    D T+      +E+D +  + NN + +    S+P P  
Sbjct: 762 EAGRRQLREILGLSPDKVKPNSDDKTKTSVRERKETDGEPSEDNNTQKAAPIASNPPPPP 821

Query: 263 PLPP 274
           PLPP
Sbjct: 822 PLPP 825


>Z96047-8|CAC42278.1|  507|Caenorhabditis elegans Hypothetical
           protein DY3.4b protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 19  LSFYHFEKYLIKHGCQNLYQW 81
           +S +H EKY+    C N+ +W
Sbjct: 69  ISMFHLEKYIGSTNCANILEW 89


>Z96047-7|CAB09413.1|  561|Caenorhabditis elegans Hypothetical
           protein DY3.4a protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 19  LSFYHFEKYLIKHGCQNLYQW 81
           +S +H EKY+    C N+ +W
Sbjct: 123 ISMFHLEKYIGSTNCANILEW 143


>Z81492-3|CAB04030.1|  382|Caenorhabditis elegans Hypothetical
           protein E03H4.6 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 77  SGISGNKEVKKRQQRVLMILDSKNIKYEVIDITE 178
           S +S NKE +K   ++L I   + +KY +  IT+
Sbjct: 178 SSMSPNKEAEKDVSKILKISHGRLLKYYIYQITQ 211


>Z83125-5|CAB05622.2|  362|Caenorhabditis elegans Hypothetical
           protein T15D6.6 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 77  SGISGNKEVKKRQQRVLMILDSKNIKYEVIDITEPGRES 193
           S +S NKE +K   ++L I     +KY +  IT   R +
Sbjct: 138 SSMSPNKEAEKDVSKILKISHGSLLKYYIYQITHDKRNN 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,434,390
Number of Sequences: 27780
Number of extensions: 177803
Number of successful extensions: 559
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)