Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B12f
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33500.2 68415.m04107 zinc finger (B-box type) family protein       29   1.4  
At2g33500.1 68415.m04106 zinc finger (B-box type) family protein       29   1.4  
At3g27025.1 68416.m03381 expressed protein                             29   1.8  
At5g38410.1 68418.m04643 ribulose bisphosphate carboxylase small...    29   2.4  
At1g53165.1 68414.m06023 protein kinase, putative similar to ser...    28   3.2  
At1g06030.1 68414.m00631 pfkB-type carbohydrate kinase family pr...    28   3.2  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    28   4.2  
At1g06020.1 68414.m00630 pfkB-type carbohydrate kinase family pr...    28   4.2  
At2g13450.1 68415.m01484 hypothetical protein similar to zinc fi...    27   7.4  
At1g15660.1 68414.m01880 expressed protein similar to CENPCA pro...    27   7.4  
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK...    27   9.8  
At5g38420.1 68418.m04644 ribulose bisphosphate carboxylase small...    27   9.8  
At4g02000.1 68417.m00269 expressed protein low similarity to zin...    27   9.8  

>At2g33500.2 68415.m04107 zinc finger (B-box type) family protein
          Length = 401

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 140 SKNIKYEVIDITEPGR-ESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQ 316
           SK + +E +++ + G  E + + M     + GG++S P+P +     +   +  CG+  Q
Sbjct: 168 SKQVVFEQLELLKRGFVEGEGEIMVPEGINGGGSISQPSPTTSF-TSLLMSQSLCGNGMQ 226

Query: 317 FDLAN 331
           ++  N
Sbjct: 227 WNATN 231


>At2g33500.1 68415.m04106 zinc finger (B-box type) family protein
          Length = 402

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 140 SKNIKYEVIDITEPGR-ESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQ 316
           SK + +E +++ + G  E + + M     + GG++S P+P +     +   +  CG+  Q
Sbjct: 168 SKQVVFEQLELLKRGFVEGEGEIMVPEGINGGGSISQPSPTTSF-TSLLMSQSLCGNGMQ 226

Query: 317 FDLAN 331
           ++  N
Sbjct: 227 WNATN 231


>At3g27025.1 68416.m03381 expressed protein 
          Length = 299

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 191 SDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCG 304
           SD   ++ N+ S  G   DPNP        F+++E+CG
Sbjct: 44  SDVQDIRTNSFSFYGHTHDPNPSKVEQDLRFDEDEFCG 81


>At5g38410.1 68418.m04643 ribulose bisphosphate carboxylase small
           chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)
           identical to SP|P10798 Ribulose bisphosphate carboxylase
           small chain 3B, chloroplast precursor (EC 4.1.1.39)
           (RuBisCO small subunit 3B) {Arabidopsis thaliana}
          Length = 181

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 185 RESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTL 346
           R+++KD    +  S+GG VS      P+  + F    Y  D    +LA EVD L
Sbjct: 37  RKTNKDI--TSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYL 88


>At1g53165.1 68414.m06023 protein kinase, putative similar to
           serine/threonine protein kinase 24 [Homo sapiens]
           SWISS-PROT:Q9Y6E0
          Length = 1007

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = +2

Query: 155 YEVIDITEPG---RES-DKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGD-YDQF 319
           + V +I+E G   R+S   D+ + +  S  GTV   +PRS     MF D+      Y  F
Sbjct: 711 FGVPEISEGGFNKRDSYQNDYQEEDDSSGSGTVVIRSPRSSQSSSMFRDQSSGSTRYTSF 770

Query: 320 DLANEVDTL 346
           D A+   T+
Sbjct: 771 DDASTSGTV 779


>At1g06030.1 68414.m00631 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 329

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +2

Query: 128 MILDSKNIKYEVID-ITEPGRESDKDFMQNNAKSSGGTVS-DPNPRSPL-PPQMFNDEEY 298
           +I  +K   Y  I  ITEP R +    M+  AK +G  +S DPN R PL P      ++ 
Sbjct: 132 LIRSAKVFHYGSISLITEPCRSAHMKAMEV-AKEAGALLSYDPNLREPLWPSPEEARKQI 190

Query: 299 CGDYDQFDLANEVDTLEQFL 358
              +D+ D+    D   +FL
Sbjct: 191 MSIWDKADIIKVSDVELEFL 210


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 194  DKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEY---CGDYDQFDLANEVDTLEQF 355
            D ++  +  K  G  +S+ +  S     + ++ +Y   C D D  DL NE+D  E +
Sbjct: 1090 DDNYNHHKIKGCGIRLSEDDESSDDDDDLSSETDYSDECEDSDDSDLGNEIDYSEDY 1146


>At1g06020.1 68414.m00630 pfkB-type carbohydrate kinase family
           protein similar to fructokinase GI:2102693 from
           [Lycopersicon esculentum]
          Length = 345

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +2

Query: 128 MILDSKNIKYEVID-ITEPGRESDKDFMQNNAKSSGGTVS-DPNPRSPLPPQMFNDE-EY 298
           +I  +K   Y  I  ITEP R +    M+  AK +G  +S DPN R PL P       + 
Sbjct: 131 LIRSAKVFHYGSISLITEPCRSAHMKAMEV-AKEAGALLSYDPNLREPLWPSPEEARTQI 189

Query: 299 CGDYDQFDLANEVDTLEQFL 358
              +D+ D+    D   +FL
Sbjct: 190 MSIWDKADIIKVSDVELEFL 209


>At2g13450.1 68415.m01484 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 394

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +2

Query: 119 RVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEY 298
           RV      +N++ EV  + +    S  +     ++SS  T  DP PR P PP   N +E 
Sbjct: 228 RVTNTTAQRNVREEVF-MRDENLRSSMNSQSQMSESSFPTPIDPPPRIPHPP--LNPDEL 284

Query: 299 CGDY 310
              Y
Sbjct: 285 VAAY 288


>At1g15660.1 68414.m01880 expressed protein similar to CENPCA
           protein (GI:11863170) {Zea mays}
          Length = 705

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +2

Query: 107 KRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGG--TVSDPNPRSPL--PP 274
           + Q++   IL+  ++  ++  I  P +   +  +    KS     T S P P +P   P 
Sbjct: 63  EHQEQAKAILEDVDVDVQLNPI--PNKRERRPGLDRKRKSFSLHLTTSQPPPVAPSFDPS 120

Query: 275 QMFNDEEYCGDYDQFDLAN 331
           +    E++   YD+F+LAN
Sbjct: 121 KYPRSEDFFAAYDKFELAN 139


>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
           putative similar to cyclin dependent kinase C
           [Lycopersicon esculentum] gi|15215944|emb|CAC51391
          Length = 513

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 110 RQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGG 235
           R+ ++L  L  +N+ +    +T PGR+ D     +N K  GG
Sbjct: 72  REIKILKKLHHENVIHLKEIVTSPGRDRDDQGKPDNNKYKGG 113


>At5g38420.1 68418.m04644 ribulose bisphosphate carboxylase small
           chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)
           identical to SP|P10797 Ribulose bisphosphate carboxylase
           small chain 2B, chloroplast precursor (EC 4.1.1.39)
           (RuBisCO small subunit 2B) {Arabidopsis thaliana}
          Length = 181

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 224 SSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTL 346
           S+GG VS      P+  + F    Y  D    +LA EVD L
Sbjct: 48  SNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYL 88


>At4g02000.1 68417.m00269 expressed protein low similarity to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 314

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +2

Query: 119 RVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEY 298
           RV      +N++ EV  + +    S  +     ++SS  T  DP PR P PP   N +E 
Sbjct: 148 RVTNSTAQRNVREEVF-MRDENLRSSMNSQSQMSESSFPTPIDPPPRIPHPP--LNPDEL 204

Query: 299 CGDY 310
              Y
Sbjct: 205 VAAY 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,833,130
Number of Sequences: 28952
Number of extensions: 163735
Number of successful extensions: 541
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)