Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    28   0.73 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.3  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   1.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   3.9  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   3.9  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   3.9  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   3.9  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    26   3.9  
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    25   5.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.2  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   6.8  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 87  KSMSRDQFSGCHPGRSFSPNHSRRGPSSLQCRLLETITR*TTME 218
           +S SRD FS     RS+S + SR     L+  L+E +TR  T E
Sbjct: 73  RSSSRDSFSS---NRSYSSSLSRSPEEPLRTILVENLTRNVTKE 113


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 228 SVTRLRMGPSRRRPEVPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMSPKLQH 407
           S T L    S     V + + + +T++++PT++  S+P S     T TS +      +  
Sbjct: 387 SSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNS 446

Query: 408 LTPPSATT 431
            T  SA++
Sbjct: 447 TTATSASS 454



 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 228 SVTRLRMGPSRRRPEVPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMSPKLQH 407
           S T L    S     V + + + +T++++PT++  S+P S     T TS +      +  
Sbjct: 501 SSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTSVNS 560

Query: 408 LTPPSATT 431
            T  SA++
Sbjct: 561 TTATSASS 568



 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 297 STATLIPTATNGSSPTSLVTLATLTSQTKRMSPKLQHLTPPSATT 431
           +T++L+P++T  S+P S     T TS +      +   T  SA++
Sbjct: 277 NTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASS 321


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 15  RDRCTSSFRLTNTTPYIDRMTAKMKSMSRDQFSGCHP-GRSFSPNHSRRGP 164
           R R  S     + +PY D  + +     R +     P GRS SP++ RR P
Sbjct: 114 RSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDRRSP 164


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 276 PTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMSP-KLQHLTPPSATT 431
           P  SY++   + +P++T+  SPTS     + T  +  + P  +     PS+T+
Sbjct: 102 PVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTS 154


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 22/85 (25%), Positives = 33/85 (38%)
 Frame = +3

Query: 192 TITR*TTMEVLHSVTRLRMGPSRRRPEVPTVSYAESTATLIPTATNGSSPTSLVTLATLT 371
           T+T  TT+    SVT    G       + TV    +T     T T G + ++ +T  T+ 
Sbjct: 279 TVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVPTTTNYGYTTVTTGYTGSTTLT-TTVP 337

Query: 372 SQTKRMSPKLQHLTPPSATTEYRTT 446
                  P   ++  P  TT   TT
Sbjct: 338 HSGNETGPTTVYVETPYPTTVTTTT 362



 Score = 25.8 bits (54), Expect = 3.9
 Identities = 22/85 (25%), Positives = 33/85 (38%)
 Frame = +3

Query: 192 TITR*TTMEVLHSVTRLRMGPSRRRPEVPTVSYAESTATLIPTATNGSSPTSLVTLATLT 371
           T+T  TT+    SVT    G       + TV    +T     T T G + ++ +T  T+ 
Sbjct: 357 TVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVPTTTNYGYTTVTTGYTGSTTLT-TTVP 415

Query: 372 SQTKRMSPKLQHLTPPSATTEYRTT 446
                  P   ++  P  TT   TT
Sbjct: 416 HSGNETGPTTVYVETPYPTTVTTTT 440



 Score = 25.8 bits (54), Expect = 3.9
 Identities = 22/85 (25%), Positives = 33/85 (38%)
 Frame = +3

Query: 192 TITR*TTMEVLHSVTRLRMGPSRRRPEVPTVSYAESTATLIPTATNGSSPTSLVTLATLT 371
           T+T  TT+    SVT    G       + TV    +T     T T G + ++ +T  T+ 
Sbjct: 591 TVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVPTTTNYGYTTVTTGYTGSTTLT-TTVP 649

Query: 372 SQTKRMSPKLQHLTPPSATTEYRTT 446
                  P   ++  P  TT   TT
Sbjct: 650 HSGNETGPTTVYVETPYPTTVTTTT 674


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 285 SYAESTATLIPTATNGSSPTSLVTLATLTSQTKRM 389
           S   S+ T  PT T+  +PT   T  T T+Q+  M
Sbjct: 844 SSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGM 878


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
 Frame = +3

Query: 123 PGRSFSPNHSRRG--PSSLQCRLLETITR*TTMEVLHSVT---RLRM--GPSRRRPEVPT 281
           P  S +   + +G  PS    +L  +ITR    E+  S +   RL      S+      T
Sbjct: 54  PNSSSNSTPANQGSLPSHTNPQLYSSITRKERPELFRSYSGNPRLSKPYASSKLAASSRT 113

Query: 282 VSYAESTATLIPTATNGSSPTSL 350
            SY   + ++ PT+TN S  TSL
Sbjct: 114 ASYQAMSYSVSPTSTNSSVATSL 136


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 294 PRTTQSVPLVSSLKDPSAAS*PNVKLPSSF 205
           P+   +VP +S+    S AS PN+K  S F
Sbjct: 70  PKIPSAVPHISTPNPSSGASTPNIKRVSDF 99


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -2

Query: 310 NVAVLSAYDTVGTSGL---LLEGPIRSLVTE 227
           ++ +++AYDT+G  GL   L E  +R + TE
Sbjct: 145 SMTIVTAYDTLGEEGLLHSLRESGVRGMYTE 175


>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 185 IRNYNKVNDDGSFTFGYEAADGSFKEETRGTDCVVRGKYGYID 313
           I+NY+K+N      FG E AD    E+    +C   G+ G ++
Sbjct: 124 IKNYSKINILIKELFGLEVADCIEDEDGYRFNCKNTGRRGTLE 166


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 273 VPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMSPKLQHLTPPSATTEYRT 443
           +PT S + +T+T IPT  + S  T +      TS +    P      PP++T+   T
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIP-----IPPTSTSSTDT 273


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 86  HLGGHSVYIWSRIGQPER 33
           HL GHS+ I+S + +PER
Sbjct: 542 HLRGHSLRIYSVLYEPER 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,550
Number of Sequences: 5004
Number of extensions: 34254
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)