Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305B11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 30 0.98
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 29 2.3
12_01_0249 + 1850443-1851030 29 3.0
02_02_0097 - 6746934-6747005,6747372-6748325,6748421-6748435,674... 29 3.0
01_04_0011 + 15067536-15068236,15068283-15068898 29 3.0
11_04_0355 + 16705281-16706006 28 4.0
03_05_0874 - 28429982-28430083,28430284-28430472,28430585-284306... 28 5.2
01_01_0769 - 5944910-5946613,5946768-5946887,5948243-5948300,594... 28 5.2
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734... 27 6.9
04_04_1266 + 32239451-32239829,32239874-32239884 27 6.9
02_01_0379 + 2744535-2744581,2744653-2744712,2745334-2745461,274... 27 6.9
10_08_0615 - 19259402-19259597,19260248-19260735,19264895-19265140 27 9.1
04_03_0489 + 16503325-16503747,16503916-16503978 27 9.1
01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,414... 27 9.1
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 30.3 bits (65), Expect = 0.98
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 9 GTRDRCTSSFRLTNTTPY-IDRMTAKMKSMSRDQFSGCHPGRSFSPNHSRRGPSSLQCR 182
GTR++C N T Y I+R+T + F CH G + SP++ L C+
Sbjct: 105 GTREKCVGC----NKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCK 159
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 264 RPEVPTVSYAESTATLIPTATNGSSPTSLVTLAT 365
+P P +E +PTAT S+P + VT A+
Sbjct: 107 QPPAPPAPVSEPVTAPVPTATTASAPAAAVTAAS 140
>12_01_0249 + 1850443-1851030
Length = 195
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -3
Query: 348 ET*VNSRLLPSGSM*PYFPRTTQSVPLVSSLKDPSAAS*PNVKLPSS 208
E V+S+ SG+ F TT S L +S D SAA+ P LP+S
Sbjct: 20 ENKVSSKKRRSGAKSCSFGSTTSSSSLAASSSDDSAATTPRSVLPTS 66
>02_02_0097 -
6746934-6747005,6747372-6748325,6748421-6748435,
6748592-6748984
Length = 477
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 270 EVPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMSPKLQHLTPPSATTEYRTT 446
++P + S+++L+ + +G++ TSL+ T + +P + L ATT TT
Sbjct: 192 QLPPTRPSSSSSSLVGSPADGAASTSLLRTMTPMMASSSATPSPRELAAQVATTTTTTT 250
>01_04_0011 + 15067536-15068236,15068283-15068898
Length = 438
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 300 TATLIPTATNGSSPTSLVTLATLTSQTKRMSPKLQHLTPPS 422
TA T SSPT T +T R+ P +H+ PP+
Sbjct: 235 TAGWCSTTARSSSPTPSSTEGKVTVDDNRVGPLYEHVFPPA 275
>11_04_0355 + 16705281-16706006
Length = 241
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 521 GISEIVLEERRGGSWGLLAWGPLS-WGS 441
G +V EERR WG+L+W + WGS
Sbjct: 213 GDGGVVEEERRRRGWGVLSWKVWNLWGS 240
>03_05_0874 -
28429982-28430083,28430284-28430472,28430585-28430655,
28430754-28431021,28432579-28432818,28433791-28433979
Length = 352
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 500 EERRGGSWGLLAWGPLSWGSSVL---RRRARRSQVLELRAHP 384
EERRGG G A SWG +L R +R+ V+ R +P
Sbjct: 43 EERRGGDGGCAASLTSSWGKLLLLEPRAAPKRTSVVLWRENP 84
>01_01_0769 -
5944910-5946613,5946768-5946887,5948243-5948300,
5948544-5948627,5949356-5949456,5949562-5949745,
5950746-5950774,5951134-5951226
Length = 790
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 87 KSMSRDQFSGCHPGRSFSP 143
KS S DQ S HPG FSP
Sbjct: 542 KSQSGDQLSSQHPGNVFSP 560
>11_06_0667 +
26071774-26072070,26072352-26073153,26073209-26073411,
26075078-26075521,26075703-26075758,26076323-26076402,
26077098-26077174,26077279-26078301
Length = 993
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 251 SFKEETRGTDCVVRGKYGYIDPD 319
++ +ET G+D + G GYIDP+
Sbjct: 326 TWDDETEGSDYPMAGTLGYIDPE 348
>04_04_1266 + 32239451-32239829,32239874-32239884
Length = 129
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 276 PTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMSPKLQHLTPPSATTEYRTT 446
PT SY+ ++A PT N SS + + T+ +R P + T YR T
Sbjct: 4 PTTSYSTTSALGDPTCPNTSSDE--IRIITIDYSIRRDRPSFKTSPSRKTLTNYRRT 58
>02_01_0379 +
2744535-2744581,2744653-2744712,2745334-2745461,
2745553-2745651,2745742-2745900,2746125-2746211,
2746300-2746391,2746629-2746703,2746805-2746984
Length = 308
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Frame = +2
Query: 209 DDGSFTFGYEAADG---SFKE--ETR--GTDCVVRGKYGYIDPDGNKREFTYV 346
++G F++GY +A G S ++ ETR G D G +G D G R YV
Sbjct: 37 ENGKFSYGYASAPGKRASMEDFYETRIDGVDGETIGLFGVFDGHGGARAAEYV 89
>10_08_0615 - 19259402-19259597,19260248-19260735,19264895-19265140
Length = 309
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -2
Query: 388 ILFVWLVRVARVTRDVGELPFVAVG--INVAVLSAYDTVGTSGLLLEGPIRSL 236
+LFV + VA TR VGEL +AVG + + +L A T G S P+R+L
Sbjct: 211 LLFV-VTAVATDTRAVGELAGIAVGAAVTLNILIAGPTTGGS----MNPVRTL 258
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 235 RGCGWVLQGGDQRYRLCRTRKVR 303
R GWV G + R+R C T ++R
Sbjct: 114 RSAGWVGDGREWRWRRCSTERLR 136
>01_01_0563 +
4142351-4144510,4145610-4147259,4147942-4148185,
4148280-4148830
Length = 1534
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -2
Query: 379 VWLVRVARVTRDVGELPFVAVGINVAVLSAYDTVGTSGLLLEGPIRSLVT 230
VWL+ A V G + + +++ +L DT+G LLLE +RS V+
Sbjct: 570 VWLLN-ALVLLHRGAMVSLWPAVHLEILLVDDTLGLKHLLLETSLRSAVS 618
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,750,407
Number of Sequences: 37544
Number of extensions: 276839
Number of successful extensions: 1171
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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