Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305B11f
(521 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle pr... 29 0.038
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 23 1.4
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 23 2.5
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 2.5
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 2.5
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 22 4.4
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 5.8
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 5.8
AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 21 5.8
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 21 7.7
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 21 7.7
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 7.7
>EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle
protein protein.
Length = 138
Score = 28.7 bits (61), Expect = 0.038
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = +2
Query: 200 KVNDDGSFTFGYEAADGSFKEET-------RGTDCVVRGKYGYIDPDGNKREFTYVS 349
+VN DG++ +E ++G +E+ T V +G Y PDG + TYV+
Sbjct: 35 EVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVSITYVA 91
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 23.4 bits (48), Expect = 1.4
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = -1
Query: 479 WGLLAWGPLSWG 444
W WGP +WG
Sbjct: 553 WRFQPWGPFTWG 564
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 22.6 bits (46), Expect = 2.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 342 TSLVTLATLTSQTKRMSPKLQHL 410
TSL+TLAT +Q+++ P + ++
Sbjct: 251 TSLLTLATQNTQSQQSLPPVSYV 273
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.6 bits (46), Expect = 2.5
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 330 GSSPTSLVTLATLTSQTKRMSPKLQHLTPPSATTEYR 440
GSSP+S V Q + P L+P S T R
Sbjct: 1482 GSSPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLR 1518
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.6 bits (46), Expect = 2.5
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 330 GSSPTSLVTLATLTSQTKRMSPKLQHLTPPSATTEYR 440
GSSP+S V Q + P L+P S T R
Sbjct: 1478 GSSPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLR 1514
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 21.8 bits (44), Expect = 4.4
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = -2
Query: 94 ILFILAVILSIYGVVLVSRNELVHLSLV 11
+LFI + ++ G+ +++ L+HL ++
Sbjct: 11 LLFIFNFVFAVCGLGILTLGVLIHLQIL 38
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.4 bits (43), Expect = 5.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 351 VTLATLTSQTKRMSPKLQ 404
VTL T+ +K SPKL+
Sbjct: 212 VTLTTVPKHSKTKSPKLR 229
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.4 bits (43), Expect = 5.8
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Frame = +3
Query: 270 EVPTVSYAESTATLIPTATNGSSPTSL-------VTLATLTSQTKRMSPKLQHLTPPSA 425
E+P V+ ST + PT PTSL + L+ L +++ K+ H T S+
Sbjct: 361 EIPNVTLPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNCKINRKVHHTTSSSS 419
>AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein.
Length = 200
Score = 21.4 bits (43), Expect = 5.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 327 NGSSPTSLVTLATLTSQTKRMS 392
NG++P+SLV+ A+ +S S
Sbjct: 177 NGATPSSLVSSASASSAVSAAS 198
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 21.0 bits (42), Expect = 7.7
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = +2
Query: 5 IRHEGQVYQLVPADQYDSIYRQ 70
+ ++ Q YQ+V +QY + Q
Sbjct: 662 LTYQDQQYQVVSVEQYQQLKEQ 683
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 21.0 bits (42), Expect = 7.7
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -2
Query: 427 VALGGVRCWSFGLIL 383
+ LGG+ W+FG +
Sbjct: 72 IVLGGLTYWAFGFAM 86
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 7.7
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +2
Query: 11 HEGQVYQLVPADQYDSIY 64
H Q + VP D YD Y
Sbjct: 140 HTDQGEEFVPGDDYDGKY 157
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,138
Number of Sequences: 438
Number of extensions: 2544
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -