Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB...    30   0.82 
At5g35430.1 68418.m04213 expressed protein                             29   2.5  
At4g10380.1 68417.m01703 major intrinsic family protein / MIP fa...    28   4.4  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    28   4.4  

>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
           identical to abscisic acid-insensitive protein 3
           GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
           Cell 4 (10), 1251-1261 (1992))
          Length = 720

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 252 PSRRRPEVPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQT 380
           PS ++PE P  S A           N +SP++ V +A+ TSQT
Sbjct: 676 PSGQKPEAPPSSAATKRQNKSQRNINNNSPSANVVVASPTSQT 718


>At5g35430.1 68418.m04213 expressed protein
          Length = 786

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 15  RDRCTSSFRLTNTTPYIDRMTAKMKSMSRDQFSGCHPGR--SFSPNHSRRGPSSL 173
           +D C++S +L      + + + ++ S ++DQ    +PG   S S +H  R  ++L
Sbjct: 75  KDGCSNSEKLVEVLKRVKKQSEQLSSAAKDQVEAANPGTNVSVSKDHFDRTVTTL 129


>At4g10380.1 68417.m01703 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 304

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -2

Query: 391 LILFVWLVRVARVTRDVGELPFVAVGINVAVLSAYDTVGTSGLLLEGPIRSL 236
           ++LFV +  VA  TR VGEL  +AVG  V +        T G +   P+R+L
Sbjct: 205 ILLFV-VTAVATDTRAVGELAGIAVGATVMLNILVAGPSTGGSM--NPVRTL 253


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 90  SMSRDQFSGCHPGRSFSPNHSRRGPSS 170
           S SR +      GRS+SP++ RRG SS
Sbjct: 188 SRSRSRSYSSDRGRSYSPSYGRRGRSS 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,487,853
Number of Sequences: 28952
Number of extensions: 201810
Number of successful extensions: 872
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)