Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             253   6e-68
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       107   7e-24
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    42   2e-04
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.33 
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   31   0.58 
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.3  
SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)         29   3.1  
SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)          29   3.1  
SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)         29   3.1  
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   3.1  
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)          29   3.1  
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037)          27   7.1  
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)           27   9.4  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  253 bits (620), Expect = 6e-68
 Identities = 115/141 (81%), Positives = 125/141 (88%)
 Frame = -1

Query: 521 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLP 342
           N +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+P
Sbjct: 100 NCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIP 159

Query: 341 SSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHI 162
           SSNR +VGIVAGGGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHI
Sbjct: 160 SSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHI 219

Query: 161 GKASTVKRGTSAGRKVGLIAA 99
           G  STV+R T AGRKVGLIAA
Sbjct: 220 GHPSTVRRDTPAGRKVGLIAA 240


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  107 bits (256), Expect = 7e-24
 Identities = 48/66 (72%), Positives = 56/66 (84%)
 Frame = -1

Query: 521 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLP 342
           N +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+P
Sbjct: 58  NCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIP 117

Query: 341 SSNRGM 324
           SSNR +
Sbjct: 118 SSNRAL 123


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 30/82 (36%), Positives = 44/82 (53%)
 Frame = -1

Query: 512 PVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSN 333
           P+  +P GT+V N+E   G   +LARA+G  A +I    +     V+LPS  +K + S  
Sbjct: 119 PLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVEKEVSSKC 176

Query: 332 RGMVGIVAGGGRIDKPILKAGR 267
              VG V+   R ++ I KAGR
Sbjct: 177 LASVGRVSNIERKNRVIGKAGR 198


>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +1

Query: 61  VSVLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 186
           V VL P + P+LR  +RP LRP   P+L    L    W  PP
Sbjct: 410 VGVLHPMLRPMLRPMLRPMLRPMLRPMLR-PMLQYKLWCQPP 450


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 304 PPATIPTMPLLLDGRTFLAPDGSFT 378
           P AT   + L+LD  TFL PDGS T
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSAT 159


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 443  LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 315
            +AR +G+F   T +    D  RTR   P   KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513


>SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)
          Length = 275

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +3

Query: 240 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 365
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229


>SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)
          Length = 321

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +3

Query: 240 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 365
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 144 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 181


>SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)
          Length = 249

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +3

Query: 240 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 365
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229


>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 801

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +3

Query: 240 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 365
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 86  TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 123


>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
          Length = 273

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +3

Query: 240 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 365
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229


>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +1

Query: 49  VSFFVSVLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP*GCSTGFMATPRTY 228
           V  F+ +   +I P     IRP  +   V L  V  + +  WLP     +   +  P  Y
Sbjct: 204 VIIFIKLRQRKIKPQPNR-IRPRDKELGVALFIVTVVSLLTWLPDAVVLNLDSVLAPAQY 262

Query: 229 GQQLRLTLYLWYA 267
              +R TL+L Y+
Sbjct: 263 KHAVRSTLFLRYS 275


>SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 67  VLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 186
           +L P + P+LR  +RP LRP   P+L  +      W  PP
Sbjct: 1   MLRPMLRPMLRPMLRPMLRPMLRPMLQYKL-----WCQPP 35


>SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037)
          Length = 722

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = +3

Query: 240 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 365
           T DL+L   P    N  VNTST S  +DH +V    NL  SR
Sbjct: 545 TLDLLLTTYP----NVIVNTSTVSGFSDHLAVIFEVNLKPSR 582


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 301 PPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPE 432
           PPP  IP + + + GR+F+    +  +V   SG  P+T+ K  E
Sbjct: 361 PPPIDIPNLMIPIRGRSFV----NDKIVEEKSGDSPLTIKKTSE 400


>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 67  VLPPRILPVLRAAIRPTLRPADVPLLTVEALPI 165
           ++ P  LP+    I PT  P + P++   ALPI
Sbjct: 147 IIYPTALPITSPIIYPTALPINPPIIYPTALPI 179


>SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 375 YSCTLSIRIVSNHSGEVSRG 434
           Y+CTL+I +   H GE+ RG
Sbjct: 11  YACTLNINVGVKHPGEMFRG 30


>SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 351 GSAIKQQRHGRYCCWRWTY*QTYFESWKGIPQV 253
           G+A+K   + RY C  W Y       WK   QV
Sbjct: 885 GTAVKGHGYTRYFCDFWKYTAQVLPLWKSTAQV 917


>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
          Length = 426

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 280 KIGLS-IRPPPATI--PTMPLLLDGRTFLAPDGSFT 378
           ++GLS I+PPP  +  PT+P +  G     P GS T
Sbjct: 237 RLGLSNIKPPPPPVPPPTIPSVPPGSETYVPPGSAT 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,433,151
Number of Sequences: 59808
Number of extensions: 389686
Number of successful extensions: 1085
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)