Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B10f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...   277   2e-76
AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.         27   0.29 
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    25   2.0  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    23   4.7  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    23   6.2  

>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score =  277 bits (679), Expect = 2e-76
 Identities = 126/141 (89%), Positives = 132/141 (93%)
 Frame = -1

Query: 521 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLP 342
           NV+P+G MPEGTIVCNLEEK GDRG+LAR SGN+A+VI HNPD KRTRVKLPSGAKKVLP
Sbjct: 100 NVIPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLP 159

Query: 341 SSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHI 162
           S+NR MVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWP VRGVAMNPVEHPHGGGNHQHI
Sbjct: 160 SANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHI 219

Query: 161 GKASTVKRGTSAGRKVGLIAA 99
           GKASTVKRGT  GRKVGLIAA
Sbjct: 220 GKASTVKRGTPPGRKVGLIAA 240


>AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.
          Length = 144

 Score = 27.5 bits (58), Expect = 0.29
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 341 SSNRGMVGIVAGGGRIDKPILKAGRAYHK 255
           S+ +  +G V GG   D  IL  GRAYH+
Sbjct: 81  SAGQVPLGAVVGGHTSDGEILYVGRAYHE 109


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 339 KQQRHGRYCCWRWTY 295
           +QQ+HG++CC R ++
Sbjct: 280 QQQQHGQHCCCRGSH 294


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 203 GSWQHHVHMASSYV*PCTCGMPFQLSK*VCQY 298
           GS  H     SSYV    CG P ++    C++
Sbjct: 504 GSEGHKARDCSSYVKCAACGGPHRIGHMSCEH 535


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 289 LSIRPPPATIPTM 327
           + +RPPP  +PTM
Sbjct: 114 MGMRPPPMMVPTM 126


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,525
Number of Sequences: 2352
Number of extensions: 12626
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)