Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305B10f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 232 9e-62
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 225 1e-59
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 225 2e-59
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 76 1e-14
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 76 1e-14
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 51 5e-07
At2g41230.1 68415.m05091 expressed protein 30 0.82
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 29 2.5
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 29 2.5
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ... 29 2.5
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 3.3
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 27 5.8
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 27 5.8
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 27 7.7
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac... 27 7.7
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 232 bits (568), Expect = 9e-62
Identities = 102/141 (72%), Positives = 120/141 (85%)
Frame = -1
Query: 521 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLP 342
NV+P+G++PEG ++CN+E +GDRG LARASG++A VI HNP++ TRVKLPSG+KK+LP
Sbjct: 101 NVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILP 160
Query: 341 SSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHI 162
S+ R M+G VAGGGR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHI
Sbjct: 161 SACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHI 220
Query: 161 GKASTVKRGTSAGRKVGLIAA 99
G ASTV+R SAG KVG IAA
Sbjct: 221 GHASTVRRDKSAGAKVGQIAA 241
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 225 bits (550), Expect = 1e-59
Identities = 99/141 (70%), Positives = 119/141 (84%)
Frame = -1
Query: 521 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLP 342
NV+P+ ++PEG +VCN+E +GDRG LARASG++A VI HNPD+ TR+KLPSG+KK++P
Sbjct: 100 NVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVP 159
Query: 341 SSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHI 162
S R M+G VAGGGR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHI
Sbjct: 160 SGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHI 219
Query: 161 GKASTVKRGTSAGRKVGLIAA 99
G ASTV+R G+KVGLIAA
Sbjct: 220 GHASTVRRDAPPGQKVGLIAA 240
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 225 bits (549), Expect = 2e-59
Identities = 97/141 (68%), Positives = 118/141 (83%)
Frame = -1
Query: 521 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLP 342
NV+P+ ++PEG ++CN+E +GDRG ARASG++A VI HNPD +R+KLPSG+KK++P
Sbjct: 100 NVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVP 159
Query: 341 SSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHI 162
S R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHI
Sbjct: 160 SGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHI 219
Query: 161 GKASTVKRGTSAGRKVGLIAA 99
G ASTV+R G+KVGLIAA
Sbjct: 220 GHASTVRRDAPPGKKVGLIAA 240
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 76.2 bits (179), Expect = 1e-14
Identities = 44/113 (38%), Positives = 64/113 (56%)
Frame = -1
Query: 515 MPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSS 336
MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K + +
Sbjct: 63 MPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKWINAK 121
Query: 335 NRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 177
R +G V+ K + KAG++ ++ R P VRGVAMNP +HPHGGG
Sbjct: 122 CRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 76.2 bits (179), Expect = 1e-14
Identities = 44/113 (38%), Positives = 64/113 (56%)
Frame = -1
Query: 515 MPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSS 336
MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K + +
Sbjct: 63 MPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKWINAK 121
Query: 335 NRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 177
R +G V+ K + KAG++ ++ R P VRGVAMNP +HPHGGG
Sbjct: 122 CRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 50.8 bits (116), Expect = 5e-07
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -1
Query: 377 VKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAM-NP 201
+ LP +KK + S R M+G +A G + K K +KRN W VRGVAM NP
Sbjct: 382 INLPLDSKKTVLSGCRVMIGQIASSG-----LTK------KLMIKRNMWAKVRGVAMMNP 430
Query: 200 VEHPHGG 180
VEHPHGG
Sbjct: 431 VEHPHGG 437
>At2g41230.1 68415.m05091 expressed protein
Length = 88
Score = 30.3 bits (65), Expect = 0.82
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +1
Query: 178 PPP*GCSTGFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPLLL 339
P P G + + T R+ L L+L L LP F L PPPAT+ +PLLL
Sbjct: 14 PKPMGLNGSSLITARSVALLLFLSLLL-LILPPFLPPLP--PPPATLLLLPLLL 64
>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB82) mRNA, partial cds GI:3941515
Length = 201
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 281 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 120
++ R K VKR W + + HG GN I + S +KRG + R
Sbjct: 1 MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = -1
Query: 521 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP----SGAK 354
+++ G + + ++ +KM RL S I NP K LP +G +
Sbjct: 160 SILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIMKNPKPKTKSTALPRWVTAGER 219
Query: 353 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYH 258
++L R V + G + +++A A H
Sbjct: 220 RLLVGRARAHVVVAKDGSGDYRTVMEAVTAAH 251
>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
(S1) identical to S-locus related protein SLR1 homolog
(AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
profiles PF01453: Lectin (probable mannose binding),
PF00954: S-locus glycoprotein family
Length = 439
Score = 28.7 bits (61), Expect = 2.5
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +3
Query: 258 VVCPSS-FQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRG 434
+V P + F+ F T+TSS N DH + W + R ++ V+N +S+
Sbjct: 49 IVSPGNIFELGFFKTTTSSRNGDHWYLGIWYKSISERTYVW--------VANRDNPLSK- 99
Query: 435 TCQTTSITHF-LFKIAHNGTLRHSSN 509
+ T I++ L + H+GTL S+N
Sbjct: 100 SIGTLKISYANLVLLDHSGTLVWSTN 125
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 3.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 309 WRWTY*QTYFESWKGIPQVQG 247
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 253 YLWYALPAFKIGL 291
Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 175 LPPP*GCSTGFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMP 330
+PPP G M P+ YGQ LP +G+ PP A +P P
Sbjct: 611 VPPPPGSQFSHMQVPQPYGQ-----------LPPLSMGMMQPPPMAEMPPPP 651
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 392 HQDCVQSQWRSFQRHVPDDLYHPFSLQDCTQW 487
H+ Q WRS + HV D+L P ++C W
Sbjct: 667 HKFFKQVMWRSSKVHVADELQLP-PQEECVSW 697
>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
8 / ERF transcription factor 8 (ERF8) identical to ERF
transcription factor 8 GI:10567108 from [Arabidopsis
thaliana]
Length = 185
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 446 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPI 282
R +A NF ++G +P T V P+ A+ + P +G GGG + I
Sbjct: 78 RGVKAKTNFGVIVGSSPTQSSTVVDSPTAARFITPPHLELSLG---GGGACRRKI 129
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,021,089
Number of Sequences: 28952
Number of extensions: 263220
Number of successful extensions: 779
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -