Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B09f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   1.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.2  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   3.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.7  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 303 QQFIHVPPQQPVFTPQHA 356
           QQ +H PP  P F  Q+A
Sbjct: 428 QQMMHRPPGDPAFHNQYA 445


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 297 PPQQFIHVPPQQPVFTPQHAV 359
           PP    H PP+ PV T  H +
Sbjct: 737 PPPHPHHQPPRNPVGTNPHDI 757


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 297 PPQQFIHVPPQQPVFTPQHAV 359
           PP    H PP+ PV T  H +
Sbjct: 629 PPPHPHHQPPRNPVGTNPHDI 649


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 312 IHVPPQQPVFTPQHA 356
           +H PP  PV+T  +A
Sbjct: 160 LHYPPPPPVYTHHYA 174


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 334 LFLHHNMLFLCLQYRIIP 387
           +F  H +  LC+ Y ++P
Sbjct: 122 IFTVHLLFLLCIYYFVVP 139


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 37  WLSLHTWT 60
           W++LH WT
Sbjct: 476 WITLHIWT 483


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 37  WLSLHTWT 60
           W++LH WT
Sbjct: 476 WITLHIWT 483


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 37  WLSLHTWT 60
           W++LH WT
Sbjct: 476 WITLHIWT 483


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 37  WLSLHTWT 60
           W++LH WT
Sbjct: 476 WITLHIWT 483


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -1

Query: 491 NRCHWCSSMSCRN 453
           NRC +C    C N
Sbjct: 136 NRCQYCRYQKCLN 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,492
Number of Sequences: 336
Number of extensions: 1527
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)