Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37732| Best HMM Match : RVT_1 (HMM E-Value=2e-23)                   28   5.4  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          27   7.1  

>SB_37732| Best HMM Match : RVT_1 (HMM E-Value=2e-23)
          Length = 951

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 432 VAWHQVLVERDSLALGYY 379
           + W +VL+E++S+ LGYY
Sbjct: 111 IIWCEVLLEKESILLGYY 128


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -1

Query: 203  DSLR-WWCRSGDQYLRW 156
            DSLR WW +SGDQ  +W
Sbjct: 3564 DSLRLWWYKSGDQGNKW 3580


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,377,511
Number of Sequences: 59808
Number of extensions: 196227
Number of successful extensions: 493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)