Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794...    28   3.3  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    27   7.7  

>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
           Domain of Unknown function
          Length = 350

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 353 MLWCKNRLLWWHMYKLLWW 297
           M+W ++R + WHM ++L W
Sbjct: 139 MIWLQHRSMLWHMERMLRW 157


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 294 SPPQQFIHVPPQQPVFTPQHAVF 362
           SPP   +H PP  PVF+P   VF
Sbjct: 586 SPPPP-VHSPPPPPVFSPPPPVF 607


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,410,055
Number of Sequences: 28952
Number of extensions: 135092
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)