Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B08f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5FKU2 Cluster: Response regulator receiver protein; n=...    33   4.0  
UniRef50_Q4N1K7 Cluster: Gas41, putative; n=3; Piroplasmida|Rep:...    33   5.2  
UniRef50_UPI0000F30C93 Cluster: UPI0000F30C93 related cluster; n...    32   9.2  
UniRef50_A1TXX0 Cluster: Response regulator receiver protein; n=...    32   9.2  

>UniRef50_A5FKU2 Cluster: Response regulator receiver protein; n=1;
           Flavobacterium johnsoniae UW101|Rep: Response regulator
           receiver protein - Flavobacterium johnsoniae UW101
          Length = 397

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = -1

Query: 419 GGGQTSGCRNYLYLFRASVTVTSRTQAEYRQQKRLAPEECNSQKILRSTN 270
           G    SG ++    FRA +  T ++ +EY +  R++PE+ NS  + +STN
Sbjct: 348 GMAWASGFKSRTTCFRAFIKHTGKSPSEYFKIIRISPEKTNSYFLKQSTN 397


>UniRef50_Q4N1K7 Cluster: Gas41, putative; n=3; Piroplasmida|Rep:
           Gas41, putative - Theileria parva
          Length = 241

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 185 KKYFCLYNEHET-TICDYLCLISYFVNQQNLLIAKFFENC 301
           + YF  +++ E  T+C Y+C  SYF N+   L+A+  E C
Sbjct: 159 RDYFWNFDQKEKETVCRYICSQSYFQNETYRLLAEASELC 198


>UniRef50_UPI0000F30C93 Cluster: UPI0000F30C93 related cluster; n=1;
           Bos taurus|Rep: UPI0000F30C93 UniRef100 entry - Bos
           Taurus
          Length = 582

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 473 R*CETTARPSTCP-PAPPGGGGQTSGCRNYLYLFRA 369
           R C T  RP  CP P+ PGGGG+  G R   +  RA
Sbjct: 172 RCCRT--RPRACPLPSAPGGGGKEEGTRASAWPLRA 205


>UniRef50_A1TXX0 Cluster: Response regulator receiver protein; n=3;
           Marinobacter|Rep: Response regulator receiver protein -
           Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 /
           VT8)(Marinobacter hydrocarbonoclasticus (strain DSM
           11845))
          Length = 252

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 149 VSKNEIYICILKKKYFCLYNEHETTICDY 235
           +  +++Y C   +KY  L++ H  T+CDY
Sbjct: 154 IDLSDLYYCEADQKYVTLHHRHGETVCDY 182


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 503,958,352
Number of Sequences: 1657284
Number of extensions: 10164719
Number of successful extensions: 35241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35005
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)