Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    31   0.10 
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    28   0.73 
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    27   2.2  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    26   3.0  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    25   6.8  
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    25   6.8  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 516 GQNSFVYLLISRICTVMRNNSPPLDLSPC 430
           G NSF YLL+S   T+ + N P  DL+ C
Sbjct: 279 GPNSFEYLLVSAFLTLTQLNLPAYDLNFC 307


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -3

Query: 498 YLLISRICTVMRNNSPPLDL 439
           Y ++S+IC+V+R+ SPP ++
Sbjct: 416 YFVLSQICSVLRSQSPPQNI 435


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 449 PSTCPPAPPGGGGQTSGCRNYLYLFRASVTVTSRTQAEYRQQKRLAPEECN 297
           PST PP      G+T G     ++F++   + + +  ++   + +A E  N
Sbjct: 409 PSTVPPGTDPTTGETQGLVRSHFIFKSDTGLLTISGGKWTTYREMAEETVN 459


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +2

Query: 233 YLCL-ISYFVNQQNLLIAKFFE 295
           YLC  ++Y+V+QQN+L  K  E
Sbjct: 155 YLCKKVNYYVSQQNMLFGKELE 176


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 319 DSHPKNAILKKFCDQQILLIDKIRY 245
           D+ P++A+LK   D  I   DKIRY
Sbjct: 119 DTDPEDAVLKDGFDWYISPSDKIRY 143


>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 403 EVCPPPPGGAGGQVEGRAVVSHH 471
           ++ PPPP    G V   AV  HH
Sbjct: 57  KIFPPPPQTIKGTVNDAAVFPHH 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,711
Number of Sequences: 5004
Number of extensions: 42968
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)