Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0429 - 25150266-25150916                                         31   0.42 
03_01_0021 + 186827-187243                                             31   0.56 
03_01_0022 + 189525-189551,189600-189950                               30   1.3  
11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570...    28   4.0  
04_03_0801 - 19828175-19828770,19828913-19828994                       28   4.0  
12_01_0724 - 6377023-6379392                                           27   6.9  
06_03_1381 - 29754405-29754525,29754617-29754671,29755383-297554...    27   6.9  
02_01_0107 + 785993-786359,786773-787703,787807-787975,788472-78...    27   6.9  
06_03_1235 + 28593906-28594412,28594670-28594756,28594890-285950...    27   9.1  
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462...    27   9.1  

>04_04_0429 - 25150266-25150916
          Length = 216

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -1

Query: 452 RPSTCPPAPP-GGGGQTSGCRNYLYL---FRASVTVTSRTQAEYRQQKRLAPEE 303
           R S+ PP PP  GGG   G R++L      RA   +  R+    R++ RL  E+
Sbjct: 70  RASSSPPPPPRSGGGGAEGSRDFLIANPKRRARAAIGGRSSRSRRRRLRLRRED 123


>03_01_0021 + 186827-187243
          Length = 138

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
 Frame = -1

Query: 467 CETTARPSTCPPAPPGGGG--------QTSGCRNYLYLFRASVTVTSRTQ 342
           C T   P T PP+PP GGG        + S C N L L +  + V    Q
Sbjct: 34  CPTPTPPVTPPPSPPSGGGNKCPIDALKLSVCANVLNLLKLKIGVPESEQ 83


>03_01_0022 + 189525-189551,189600-189950
          Length = 125

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 467 CETTARPSTCPPAPPGGGG 411
           C T   P T PP+PP GGG
Sbjct: 20  CPTPTPPVTPPPSPPSGGG 38


>11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,
            5709679-5709975
          Length = 1214

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 513  QNSFVYLLISRICTVMRNNSPPLDLSPCPP 424
            ++S    +   +C +  +N P L L+PCPP
Sbjct: 1044 EDSVSEFMFPNLCELEISNCPKLQLTPCPP 1073


>04_03_0801 - 19828175-19828770,19828913-19828994
          Length = 225

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 397 QPEVCPPPPGGAGGQV 444
           QP VCPPPP G GG V
Sbjct: 200 QP-VCPPPPCGGGGYV 214


>12_01_0724 - 6377023-6379392
          Length = 789

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 371 LGKDTNSSGNRRSAPRPPGGQGDRSRGG 454
           LG++    G  RSA  PP G G+  R G
Sbjct: 38  LGREEALEGVERSATSPPAGDGEGRRDG 65


>06_03_1381 -
           29754405-29754525,29754617-29754671,29755383-29755440,
           29755819-29755988,29756576-29756780
          Length = 202

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
 Frame = -1

Query: 455 ARPSTCPPAPP----GGGGQTSG--CRNYLY 381
           AR +  PP PP    GGGG   G  C+ YL+
Sbjct: 15  ARGADAPPPPPVAAGGGGGAVKGKSCKGYLF 45


>02_01_0107 +
           785993-786359,786773-787703,787807-787975,788472-788588,
           788815-788961
          Length = 576

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 400 PEVCPPPPGGAGGQVEGRAVVSHHR 474
           PE   PP GG GG   G A V+  +
Sbjct: 12  PEAAAPPGGGGGGGAWGAAAVAQRK 36


>06_03_1235 +
           28593906-28594412,28594670-28594756,28594890-28595027,
           28595752-28595771,28595772-28595967,28596104-28596168,
           28596299-28596404
          Length = 372

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 449 PSTCPPAPPGGGGQTSGCRNYLYLFRASVTVTS 351
           PS+ P AP GGGG  S     L LF A+    S
Sbjct: 50  PSSHPQAPAGGGGARSKEAAGLLLFCAAARAAS 82


>02_05_0410 +
           28744716-28744841,28745361-28745965,28746151-28746270,
           28746597-28746737,28748626-28749370
          Length = 578

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 455 ARPSTCPPAPPGGGGQTSG 399
           AR   C PAP   GG+TSG
Sbjct: 288 ARKVVCIPAPAAAGGRTSG 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,421
Number of Sequences: 37544
Number of extensions: 287442
Number of successful extensions: 1449
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)