Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305B08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079) 29 3.1
SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0) 28 4.1
SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0) 28 4.1
SB_38788| Best HMM Match : rve (HMM E-Value=4e-06) 28 5.4
SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10) 27 7.1
SB_19545| Best HMM Match : VWA (HMM E-Value=0.00034) 27 7.1
SB_32705| Best HMM Match : VWA (HMM E-Value=2e-27) 27 7.1
SB_55992| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-06) 27 9.4
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8) 27 9.4
SB_20784| Best HMM Match : Collagen (HMM E-Value=0.0036) 27 9.4
>SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 515 DRIALFIYLF-QEFAR*CETTARPSTCPPAPPGGGGQTSGCRNYLYLFRASVTVTSRT 345
DR+A + L Q A + TA+P+TC PA G Q C LY +V V RT
Sbjct: 339 DRMAFWNVLMPQLIASENQPTAKPTTCRPA--SGAKQQEYCYACLYDINRTVFVALRT 394
>SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 20 FILYQRVKLYV*CCFPVIRTYIL*-RLKLSTTLHRYCSY*IY*CVSKNEIYICILK 184
+++Y V+ YV + +R Y++ R++ R Y +Y CV + +Y+CI K
Sbjct: 316 YVVYVCVRQYV--VYVRVRQYVVYVRVRQYVVYARVRQYVVYVCVGQYVVYVCIAK 369
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 20 FILYQRVKLYV*CCFPVIRTYIL*-RLKLSTTLHRYCSY*IY*CVSKNEIYICI 178
+++Y RV YV + +R Y++ R++ R Y +Y CV + +Y+C+
Sbjct: 75 YVVYVRVGQYV--VYVRVRQYVVYARVRQYVVYVRVGQYVVYVCVRQYVVYVCV 126
>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
Length = 689
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 435 PCPPGGRGADLRLPELFVSFPS*CHGDVTDTSRVPSTKTTRTRR 304
P PPGG + E + P+ C G+ PST +T R
Sbjct: 366 PPPPGGHTTSKPIDEPSLPGPTTCRGESGTGKATPSTMSTNAHR 409
>SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1050
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 483 RICTVMRNNSPPLDLSPCPP 424
RICTV+ ++ PLD++ C P
Sbjct: 455 RICTVVTSSMNPLDINECDP 474
>SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 868
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 483 RICTVMRNNSPPLDLSPCPP 424
RICTV+ ++ PLD++ C P
Sbjct: 281 RICTVVTSSMNPLDINECDP 300
>SB_38788| Best HMM Match : rve (HMM E-Value=4e-06)
Length = 956
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 359 P*H*LGKDTNSSGNRRSAPRPPGGQG-DRSRG 451
P H + N+ +R APR PG +G D+ RG
Sbjct: 128 PIHHADRGRNNRAKKRGAPRGPGNKGSDQQRG 159
>SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10)
Length = 169
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 291 LRIAFFGCESFLLTVLGLCP*RHRD 365
LR+A E F L VLG+CP R+ +
Sbjct: 16 LRLALMAQEHFKLQVLGICPKRNAE 40
>SB_19545| Best HMM Match : VWA (HMM E-Value=0.00034)
Length = 286
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 452 RPSTCPPAPPGGG 414
+P CPP+PP GG
Sbjct: 109 KPGKCPPSPPSGG 121
>SB_32705| Best HMM Match : VWA (HMM E-Value=2e-27)
Length = 316
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 452 RPSTCPPAPPGGG 414
+P CPP+PP GG
Sbjct: 185 KPGKCPPSPPSGG 197
>SB_55992| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-06)
Length = 462
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 194 FCLYNEHETTICDYLCLISYFVNQQNLLIAKFFENC 301
FC Y+ E+ I C +YF + LLI+ F+ C
Sbjct: 82 FCFYHSMESVIRKLFCFFAYFC-PKILLISCIFKCC 116
>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
Length = 315
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 467 CETTARPSTCPPAPPGGG 414
C T+ P TCPP P G
Sbjct: 259 CPTSPSPVTCPPCPASSG 276
>SB_20784| Best HMM Match : Collagen (HMM E-Value=0.0036)
Length = 60
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 386 NSSGNRRSAPRPPGGQGDRSRGGL 457
++SGN + P P G +GD R GL
Sbjct: 27 STSGNTTAVPGPKGDKGDPGRPGL 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,841,314
Number of Sequences: 59808
Number of extensions: 328051
Number of successful extensions: 968
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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