Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   1.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 84  YCKD*NYPLPYIGTVVIKYTNVSLKTKYI 170
           YC D    +PY GT++  Y +   K+++I
Sbjct: 325 YCID--MEVPYSGTLISHYEDGETKSRFI 351


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 331 VNKNDSHPKNAILKKFCDQQILLIDKIRY 245
           +NKND + +N IL        LLI+ ++Y
Sbjct: 85  INKNDKYEENTIL----TTMPLLINVVKY 109


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 29  YQRVKLYV*CCFPVIRTYI 85
           Y  +++Y+ CC  VI +++
Sbjct: 243 YYLIQIYIPCCMLVIVSWV 261


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 29  YQRVKLYV*CCFPVIRTYI 85
           Y  +++Y+ CC  VI +++
Sbjct: 243 YYLIQIYIPCCMLVIVSWV 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,968
Number of Sequences: 438
Number of extensions: 3195
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)