Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61000.1 68418.m07652 replication protein, putative similar t...    29   1.9  
At1g10620.1 68414.m01204 protein kinase family protein contains ...    29   1.9  
At4g22030.1 68417.m03187 F-box family protein PF0064: F-box doma...    28   4.4  
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim...    28   4.4  

>At5g61000.1 68418.m07652 replication protein, putative similar to
           replication protein A1 [Oryza sativa] GI:2258469;
           contains InterPro entry IPR004365: OB-fold nucleic acid
           binding domain
          Length = 629

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 231 SHIVVSCSLYKQKYFFFNIHIYISFLE 151
           SHI  + SL+++K  FF+   YISF++
Sbjct: 456 SHITSNPSLFEEKPVFFSTRAYISFIK 482


>At1g10620.1 68414.m01204 protein kinase family protein contains
           serine/threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 718

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 464 ETTARPSTCPPAPPGGGGQTS 402
           ETT  P+T PP+PP    QTS
Sbjct: 39  ETTQPPATSPPSPPSPDTQTS 59


>At4g22030.1 68417.m03187 F-box family protein PF0064: F-box domain;
           similar to F-box protein family, AtFBX7 (GI:20197899)
           [Arabidopsis thaliana]
          Length = 626

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 78  RIYCKD*NYPLPYIGTVVIKY 140
           R+ C D  YPLP +GT++ K+
Sbjct: 214 RVLCLDKAYPLPLVGTMLEKF 234


>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
           similar to DEIH-box RNA/DNA helicase [Arabidopsis
           thaliana] GI:5881579; contains Pfam profiles PF04408:
           Helicase associated domain (HA2), PF00271: Helicase
           conserved C-terminal domain
          Length = 1299

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 465 RNNSPPLDLSPCPPGGRGADLRLPELFVSFPS*CHGDVTDTS 340
           ++N   L     PPG   AD+ L ELF  +P  C GD   TS
Sbjct: 94  KSNKEKLKCVSFPPG---ADVILQELFTHYPP-CDGDTAATS 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,950,380
Number of Sequences: 28952
Number of extensions: 223239
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)