Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305B07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 121 8e-29
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 106 2e-24
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 30 0.24
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 27 1.3
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 26 3.9
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 5.2
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 25 9.0
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 25 9.0
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 25 9.0
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 121 bits (291), Expect = 8e-29
Identities = 66/147 (44%), Positives = 88/147 (59%)
Frame = +2
Query: 62 YGTAGFRTKANLLEHVVYRMGLLAVIRSRVKNGRTIGIMITASHNLEPDNGVKLIDPDGE 241
YGTAGFRTKA+ LE VY G+ A +RS G+TIG+MITASHN DNGVK+ID DG
Sbjct: 9 YGTAGFRTKASDLEAAVYSSGVAAALRSMELKGKTIGVMITASHNPVEDNGVKIIDADGG 68
Query: 242 MLEQSWEAIATKLANVSDNDLEATTAEIIKEVNANMTLKTSIFIGMDTRYTSPRLAQAAA 421
ML WE T+LAN +A +IK+ T + + IG DTR +SPRLA+
Sbjct: 69 MLAMEWEDKCTQLANAPS---KAEFDFLIKQFLTPTTCQPKVIIGYDTRPSSPRLAELLK 125
Query: 422 NGVMALKGTPKDFGIVTTPMXXFLRKM 502
+ + + D+G +TTP +L ++
Sbjct: 126 VCLDEMSASYIDYGYITTPQLHWLVRL 152
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 106 bits (255), Expect = 2e-24
Identities = 51/151 (33%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Frame = +2
Query: 56 IEYGTAGFRTKANLLEHVVYRMGLLAVIRSRVKNGRTIGIMITASHNLEPDNGVKLIDPD 235
++YGT G+R A LL V +R G++A S +G+ +G+M+TASHN +NG+K+++
Sbjct: 33 MQYGTGGYRADAELLSSVAFRTGVIASFLSAKLHGQPVGLMVTASHNASSENGLKIVNIL 92
Query: 236 GEMLEQSWEAIATKLANV-SDNDLEATTAEIIKEVNANMTLKTSIFIGMDTRYTSPRLAQ 412
+ WEA ++ N S ++L I+K+ + +F+G D+R TS LAQ
Sbjct: 93 SSLDSSKWEAYLDQVVNADSADELTVCLTSILKKAKIIPGSEARVFVGYDSRSTSEILAQ 152
Query: 413 AAANGVMALKGTPKDFGIVTTPMXXFLRKMS 505
A +G++ K ++FG++TTP ++ K S
Sbjct: 153 AVIDGIVVCKAKYENFGLLTTPQLHYMVKAS 183
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 48 TFLLNTALPDFVQRPIYWSMSCIVWVSWLSFVPELK 155
++LL T + FVQ+ IY++ S ++ W F+ EL+
Sbjct: 634 SWLLRTRMLSFVQKIIYYTTSEVIETHWGKFMGELE 669
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 158 GRTIGIMITASHNLEPDNGVKL 223
G G+MITASHN NG K+
Sbjct: 139 GTAAGVMITASHNPAAYNGYKV 160
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -3
Query: 516 YYRYDILRRXXXXGVVTIPKSLGVPFSAMTPLAAACA----RRGLVYLVSI 376
Y RYD +R+ K+ V SA PLA+ A RRG + +V +
Sbjct: 73 YKRYDYVRKRRAPRAPNHQKTQVVVLSAWNPLASVIAHDLDRRGFIVVVLV 123
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 233 DGEMLEQSWEAIATKLANVSDNDLEATTAEIIKEVNANMTLKTSIFIGMDTRYTSPRLAQ 412
D E L + W+ + T+ D D A EIIK + +L + + D T P + Q
Sbjct: 334 DSEELARIWDTVDTQDRGYIDKDEFAVAMEIIKLRLSGKSLAS--ILAYDDNPTEPTMQQ 391
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = -2
Query: 400 GTCVSCVHSNEYTRFE--CHISIHFFYNLSS 314
GTCV C N Y + C FFY + S
Sbjct: 315 GTCVQCSDKNCYAAYHITCARRAGFFYKIYS 345
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 144 ERMTAKRPIRYTTCSNKLAFVRNP 73
+R+T +R + Y T SNK ++ P
Sbjct: 3 QRVTYRRRLAYNTRSNKTRIIKTP 26
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 521 ICIIVTTFYEEXXXXEW*QF 462
+C IVT FY++ +W Q+
Sbjct: 259 LCCIVTIFYDKNVNRQWKQY 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,583
Number of Sequences: 5004
Number of extensions: 42833
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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