Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0688 - 5211484-5211626,5211730-5211826,5211930-5212105,521...   100   6e-22
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772...    29   3.0  
06_02_0265 - 13586552-13587985                                         28   4.0  
12_01_0994 - 10077322-10077696,10078303-10078839,10079062-10079112     27   6.9  
07_03_0916 + 22565620-22566463,22566566-22566792,22566892-22567509     27   6.9  
09_06_0153 - 21243108-21245660                                         27   9.1  
07_03_0078 - 13147741-13148913                                         27   9.1  

>07_01_0688 -
           5211484-5211626,5211730-5211826,5211930-5212105,
           5212240-5212631,5212712-5212960,5213046-5213188,
           5213283-5213402,5214491-5214835
          Length = 554

 Score =  100 bits (240), Expect = 6e-22
 Identities = 57/148 (38%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
 Frame = +2

Query: 62  YGTAGFRTKANLLEHVVYRMGLLAVIRSRVKNGRTIGIMITASHNLEPDNGVKLIDPDGE 241
           YGTAGFR +   +   V R G++A +RS    G  +G++ITASHN   DNGVK++D DG 
Sbjct: 32  YGTAGFRAEGAAMGPAVCRAGVVAALRSAKLGGAAVGVVITASHNPVRDNGVKIVDADGG 91

Query: 242 MLEQSWEAIATKLANVSDND-LEATTAEIIKEVNANM--TLKTSIFIGMDTRYTSPRLAQ 412
           ML Q WE  A  LAN  + D L     +  K+ +  +  +    + +  DTR T   L  
Sbjct: 92  MLSQDWEPFADALANAPNPDALLQIVLQFAKDEDIKLGGSHSAQVLLARDTRPTGEYLLD 151

Query: 413 AAANGVMALKG-TPKDFGIVTTPMXXFL 493
            A  GV A+ G    D GI+TTP   ++
Sbjct: 152 VAVKGVNAVIGAVAVDMGILTTPQLHWM 179


>03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,
            7724751-7725072,7725183-7725661,7726157-7726430,
            7726598-7726884,7726966-7727388,7727545-7727890,
            7728011-7728328,7729817-7731081
          Length = 1803

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +2

Query: 14   AFAREMHPKTTDIFIEYGTAGFRTKANLLEHVVYRMGLLAVIRSRVKNGRTIGIMITASH 193
            AF+  +     +I I     GFR+  ++   +  +    A + S  K             
Sbjct: 906  AFSVPLDQSDDEIVISQCLEGFRSAIHVTAAMSMKTQRDAFVTSLAKFTSLHSAADIKQK 965

Query: 194  NLEPDNGVKLI-DPDGEMLEQSWEAIAT 274
            N+E    + LI D DG  L+++WE I T
Sbjct: 966  NIEAIKAILLIADEDGNYLQEAWEHILT 993


>06_02_0265 - 13586552-13587985
          Length = 477

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 474 VVTIPKSLGVPFSA-MTPLAAACARRGLVYLVSIP 373
           VV  P SLGV   A M  LAA C R GL   V++P
Sbjct: 7   VVLFP-SLGVGHLAPMLELAAVCIRHGLAVTVAVP 40


>12_01_0994 - 10077322-10077696,10078303-10078839,10079062-10079112
          Length = 320

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 128 RDPYDTRHAPINWP 87
           RDP+DTR A + WP
Sbjct: 262 RDPHDTRKASLTWP 275


>07_03_0916 + 22565620-22566463,22566566-22566792,22566892-22567509
          Length = 562

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 243 ISPSGSMSFTPLSGSRLCDAVIMMPMVRPFLTLERMTAKRPIRY 112
           ISP   M FTPL  S     +    +V P   ++   A RP  Y
Sbjct: 152 ISPRNHMVFTPLLASTCVGTLEFRSVVEPVSRIQSALATRPGSY 195


>09_06_0153 - 21243108-21245660
          Length = 850

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = -3

Query: 231 GSMSFTPLSGSRLCDAVIMMPMVR-PFLTLERMTAKRPIRYTTCSNKLAFVRNPAVPYSI 55
           GSM  TP+    L  AV+M+ +     + + RM A+  +   T   +LA   + A+  +I
Sbjct: 133 GSMMHTPVRSPELLSAVLMLTLANTASVDVSRMAAELDLT-ATGGGRLAV--STAIATNI 189

Query: 54  KMSV---VFGCISLANAYT 7
              V   VF C+ LA++ T
Sbjct: 190 ICIVGEGVFSCMKLASSRT 208


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 154 KWTHHRHHDNSIAQSR 201
           K+TH RHH N+ +Q R
Sbjct: 145 KYTHQRHHSNTSSQER 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,531,710
Number of Sequences: 37544
Number of extensions: 293938
Number of successful extensions: 922
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)