Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18070.1 68418.m02120 phosphoglucosamine mutase-related simil...   112   1e-25
At5g46410.1 68418.m05712 NLI interacting factor (NIF) family pro...    31   0.36 
At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR...    28   3.3  
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof...    28   4.4  
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont...    28   4.4  
At3g54550.1 68416.m06036 hypothetical protein contains Pfam prof...    27   7.7  
At3g54320.2 68416.m06004 ovule development protein, putative sim...    27   7.7  
At3g54320.1 68416.m06003 ovule development protein, putative sim...    27   7.7  

>At5g18070.1 68418.m02120 phosphoglucosamine mutase-related similar
           to SP|Q9P4V2 Phosphoacetylglucosamine mutase (EC
           5.4.2.3) (PAGM) (Acetylglucosamine phosphomutase)
           (N-acetylglucosamine-phosphate mutase) {Candida
           albicans}; contains Pfam profiles PF00408:
           Phosphoglucomutase/phosphomannomutase C-terminal domain,
           PF02878: Phosphoglucomutase/phosphomannomutase
           alpha/beta/alpha domain I
          Length = 556

 Score =  112 bits (270), Expect = 1e-25
 Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
 Frame = +2

Query: 26  EMHPKTTDIFIEYGTAGFRTKANLLEHVVYRMGLLAVIRSRVKNGRTIGIMITASHNLEP 205
           E+ P    + + YGTAGFR  A LLE  VYR+G+L+ +RS      T+G+MITASHN   
Sbjct: 14  ELFPIPQGVKLSYGTAGFRGDAKLLESTVYRVGILSALRSLKLGSATVGLMITASHNKVS 73

Query: 206 DNGVKLIDPDGEMLEQSWEAIATKLANVSD-NDLEATTAEII--KEVNANMTLK-TSIFI 373
           DNG+K+ DP G ML Q WE  A ++AN S   +L +   + +  +E+      K   +++
Sbjct: 74  DNGIKVSDPSGFMLSQEWEPFADQIANASSPEELVSLIRKFMEKEEIAIGENNKGAEVWL 133

Query: 374 GMDTRYTSPRLAQAAANGVMALKGTPK-DFGIVTTPMXXFL 493
           G DTR +   L +A   GV ++ G+   D GI+TTP   ++
Sbjct: 134 GRDTRPSGESLLRAGEIGVGSILGSVAIDIGILTTPQLHWM 174


>At5g46410.1 68418.m05712 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 453

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 77  FRTKANLLEHVVYRMGLLAVIRSRVKNGRTIGIMI-TASHNLEPDNGVKLIDPDGEMLEQ 253
           FR   N+ E+ VY      + R   + G    ++I TASH++     + ++DPDG+ + Q
Sbjct: 306 FRVFFNMQENTVYVRQRPHLYRFLERVGELFHVVIFTASHSIYASQLLDILDPDGKFISQ 365


>At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1253

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 150  TLERMTAKRPIRYTTCSNKLAFVRNPAVPYSIKMSVVFGCISL 22
            ++++++    +R   C N +     PA+P S+K+  V GC+SL
Sbjct: 961  SIKQLSKLHSLRLRHCRNLILL---PALPQSLKLLNVHGCVSL 1000


>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 712

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -2

Query: 400 GTCVSCVHSNEYTRFECHISIHFFYNLSSCRFQVIVTDIS*F 275
           G CVS  ++  +  ++CHI    +Y  + C+  ++   +  F
Sbjct: 236 GKCVSVANNLRWRYWKCHICSQVYYCFTDCQRHILDNHVQKF 277


>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
            leucine rich-repeat (LRR) domains Pfam:PF00560,
            INTERPRO:IPR001611; contains similarity to Cf-2.2
            [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1784

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 96   YWSMSCIVWVSWLSFVPELKMDAP 167
            YWS++    V+W++F+  L  D+P
Sbjct: 1742 YWSLAATYGVTWITFIVFLCFDSP 1765


>At3g54550.1 68416.m06036 hypothetical protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 288

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 281 ANVSDNDLEATTAEII-KEVNANMTLKTSI 367
           ANVS+ DLE  T EI+ +EV     LK  +
Sbjct: 120 ANVSERDLETKTTEIVEREVEDKSRLKNVV 149


>At3g54320.2 68416.m06004 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 356

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 159 PFLTLERMTAKRPIRYTTCSNKLAFVRN 76
           PFLT + +  + PI Y    N+LAF  N
Sbjct: 270 PFLTDQNLANENPIEYPELFNELAFEDN 297


>At3g54320.1 68416.m06003 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 427

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 159 PFLTLERMTAKRPIRYTTCSNKLAFVRN 76
           PFLT + +  + PI Y    N+LAF  N
Sbjct: 341 PFLTDQNLANENPIEYPELFNELAFEDN 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,479,741
Number of Sequences: 28952
Number of extensions: 231255
Number of successful extensions: 719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)