Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305B06f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 171 3e-43
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.047
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 29 1.8
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 28 4.1
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 28 4.1
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 28 5.4
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 5.4
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 27 7.1
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 27 9.4
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05) 27 9.4
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 171 bits (416), Expect = 3e-43
Identities = 75/128 (58%), Positives = 100/128 (78%)
Frame = +3
Query: 3 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 182
MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++ V ++V+ WF
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616
Query: 183 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 362
S+KELA V+T+ +H+ENMIKGV G++YKMRAVYAHFPIN E +++E+RNFLGEKY
Sbjct: 617 SRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKY 676
Query: 363 IRRVKMAP 386
+RRV+M P
Sbjct: 677 VRRVRMRP 684
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 34.7 bits (76), Expect = 0.047
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +3
Query: 471 ALIQQSTTVKNKDIRKF 521
ALIQQST VKNKDIRKF
Sbjct: 2 ALIQQSTKVKNKDIRKF 18
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 442 LPSMINSSFCLGELTTVTPGAIFTLLMYFSPKKLRISIIE 323
+P I S LG+L +T G I T PKKL +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257
>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 217 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 74
QT++T A F D RRR F+ +S C + L R+P P++ T
Sbjct: 85 QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 33 KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 167
K+ DGL VH+ ++ V K P+ + KR + L A+ I + +P + KV
Sbjct: 4 KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -1
Query: 155 TRVYHANVNSQVFKVP-------FENSAGPFNCHQTRFHMDRKP 45
TR YH NV VF V F S G N HQ + DR+P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -2
Query: 472 AAELETSSKELPSMINSSFCLGELTTVTPGAIFTLLMYFSPKKLRISIIEL 320
AAE++TS L + + S CL VT IFT MY P+++ ++ L
Sbjct: 234 AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 318 GNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 491
G ++ +++ LG++ + T + K+EL +SLE+VS A +Q S
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255
Query: 492 TVKNKDI 512
K+++I
Sbjct: 256 LTKDEEI 262
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 60 VKSRLVTVKGPRGVLKRNFKHL 125
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 3 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 98
+K++ + K K DG+ VH K+ TV+ PRG
Sbjct: 104 IKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 27.5 bits (58), Expect = 7.1
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +3
Query: 186 KKELAAVRTVCSHVENMIKGVTKGFQY-KMRAVYAHFPI--NCVTTEGNSIIE-IRNFLG 353
K+ LAA + V + N+ KGVT+G K R V PI V T+G + + + G
Sbjct: 948 KRALAAAKVVKTERVNVAKGVTQGMPVTKGRVVTQGMPITPGRVVTQGKVVTQGMPVTPG 1007
Query: 354 EKYIRRVKMAPGVTVVNS-PKQKDELIIEG 440
+ + + PG V P + ++ +G
Sbjct: 1008 RVVTQGIPVTPGRIVTQGIPVTQGRVVTQG 1037
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 249 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 416
T+G MR + P + VTTE ++++ +GE+ + P T++ +P Q
Sbjct: 384 TRGDHVTMRGEHPTTPASSVTTEDKDLLQML-AVGEQGLANKGTVPQSTLITTPIQ 438
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 164 LQETRVYHANVNSQVFKVPFENSAGPFNCHQ 72
L TR+ + V+S +V E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)
Length = 739
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Frame = -1
Query: 113 VPFENS-AGPFNCHQTRFHMD--RKPVW---DFDFLICYNLLH 3
+PF GP +C +TRF +D R P W D+ L+C +++
Sbjct: 6 IPFNALIVGPTSCGKTRFVVDRLRGPFWVKFDYILLVCPTIVY 48
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,887
Number of Sequences: 59808
Number of extensions: 343087
Number of successful extensions: 876
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -