Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B03f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0C2T1 Cluster: Chromosome undetermined scaffold_145, w...    33   5.2  
UniRef50_Q4SSX9 Cluster: Chromosome 8 SCAF14344, whole genome sh...    32   6.9  
UniRef50_Q8NT61 Cluster: Putative uncharacterized protein Cgl044...    32   9.2  
UniRef50_Q04QN0 Cluster: Putative uncharacterized protein; n=2; ...    32   9.2  

>UniRef50_A0C2T1 Cluster: Chromosome undetermined scaffold_145,
           whole genome shotgun sequence; n=17; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_145,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 803

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 461 IFPERLFLF--FYLFDVTLGSFIRVAVIMTSSLLRELNKNKSRY 336
           +F ER F F  +  FD+   +F++VA I  +  L  L K+KS+Y
Sbjct: 519 LFCEREFFFQDYMQFDIVAQTFVQVAYITQNEFLSILQKDKSQY 562


>UniRef50_Q4SSX9 Cluster: Chromosome 8 SCAF14344, whole genome shotgun
            sequence; n=2; Tetraodontidae|Rep: Chromosome 8
            SCAF14344, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 2446

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 497  HIDSTLAKTLCDIFPERLFLFFYLFDVTLGSFIRVAVIMTSSLLRELNKNKS 342
            H+    + TLC  + E LF F  L  + L + ++ +++    L R+LN NKS
Sbjct: 887  HVPRFCSHTLCGRYSEALFFFKSLQTIRLEAHVKFSILW--HLTRDLNMNKS 936


>UniRef50_Q8NT61 Cluster: Putative uncharacterized protein Cgl0449;
           n=3; Corynebacterium|Rep: Putative uncharacterized
           protein Cgl0449 - Corynebacterium glutamicum
           (Brevibacterium flavum)
          Length = 288

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 295 GIIYDISEINYVTQ*RDLFLFNSRNKDDVMITATRIK 405
           G++Y ++ I+YV    D+FL N +  DDV + A  ++
Sbjct: 192 GVLYPVTFIDYVVSQGDVFLENCKRADDVWLHACALR 228


>UniRef50_Q04QN0 Cluster: Putative uncharacterized protein; n=2;
           Leptospira borgpetersenii serovar Hardjo-bovis|Rep:
           Putative uncharacterized protein - Leptospira
           borgpetersenii serovar Hardjo-bovis (strain JB197)
          Length = 108

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -1

Query: 206 EFYICGQWINSNKSNIVKVIVNT*IFNLIFVILTI 102
           +F++ G W+NS    I  VI+NT I  LI VI+T+
Sbjct: 25  DFHVVGGWLNSIIVVIAFVIINT-ILRLILVIMTL 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 361,269,589
Number of Sequences: 1657284
Number of extensions: 5504817
Number of successful extensions: 9993
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9984
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)