Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    26   3.9  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   6.8  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.8  

>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 467 CDIFPERLFLFFYLFDVTLGSFIRVAVIMTSSLL 366
           C   P+RL  FF LF +    F  + +IMT+ L+
Sbjct: 138 CVHSPQRLISFFNLFSIPAYCFPIIYLIMTTILV 171


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 185 WINSNKSNIVKVIVNT*IFNLIFVIL 108
           W +S KSN V +++   +  L+F IL
Sbjct: 316 WSSSTKSNYVSLLIAMVVRELVFAIL 341


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 518 YRQYNTLHIDSTLAKTLCDIFPERLFLFFYLFDVTLGSFIRVAVIMTSSLLR 363
           YR+ N L  D    ++LC+     LF   YLF     S+  +  ++T+ L R
Sbjct: 274 YRKSNVLAAD----RSLCEYIILTLFHMEYLFSFVASSWSTLDFVITTCLSR 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,612,286
Number of Sequences: 5004
Number of extensions: 26183
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)