Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16...    27   9.1  

>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
            161530-161675,161918-161965,162054-162203,165647-165706,
            165788-165859,165960-166409,166640-166839,167239-168236,
            168676-168683,169057-169230,169341-169659,169748-169824,
            169897-169966,170040-170111,170204-170418,170540-170665,
            170751-171046,171133-171157,171163-171303,171400-171498,
            171571-171702,171793-171912
          Length = 1407

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 173  YYLSTDHRYRIRIQTKNC*HYNKLRHNNILSRLHSCDPTSMVLSMIL 313
            Y LS  HR+ +  Q K   HYN +   +  S+ HS D   +  S IL
Sbjct: 1204 YVLSVRHRFPVSDQEKR--HYNAICKLSESSKWHSYDAVDIDNSKIL 1248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,966,665
Number of Sequences: 37544
Number of extensions: 129628
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)