Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 430 FTGASCAATCIVWLAAKSQHFTLLSVEAIKTFVPSSCQATS 308
           F G +   TCI+WLA    +F   +  A +T + + C A S
Sbjct: 707 FIGFTMYTTCIIWLAFVPIYFG--TGNAHETQITTLCVAIS 745


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 430 FTGASCAATCIVWLAAKSQHFTLLSVEAIKTFVPSSCQATS 308
           F G +   TCI+WLA    +F   +  A +T + + C A S
Sbjct: 797 FIGFTMYTTCIIWLAFVPIYFG--TGNAHETQITTLCVAIS 835


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 377 PTLHTFVC*SHKNLRPIIMPGDI 309
           P LH F   +   L+ ++MP DI
Sbjct: 156 PKLHVFDLNTSHQLKQVVMPHDI 178


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 241 HLTWQSQLPAIR 206
           HL W S +P+IR
Sbjct: 470 HLVWNSWMPSIR 481


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 444  SSGKSSLERRAPLPASF 394
            SSG +++   AP+PA F
Sbjct: 1042 SSGAAAMASAAPMPACF 1058


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 424 GASCAATCIVWLAAKSQHF 368
           G +   TC++WLA    +F
Sbjct: 851 GFTMYTTCVIWLAFVPLYF 869


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,647
Number of Sequences: 438
Number of extensions: 3710
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)