Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    40   3e-04
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    34   0.011
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    32   0.060
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.0  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    26   3.0  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   3.9  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   5.2  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   5.2  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.2  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   6.8  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    25   6.8  

>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +3

Query: 81  IQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAED 197
           I+ L  MGFP  R ++AL  T     E AM WL  H ED
Sbjct: 582 IEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMED 620


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 318 LKCDECGKLFKNQDEIEYHAAKTNHSSF 401
           LKC EC KL  + +  E+H+ KT+H  F
Sbjct: 3   LKCLECDKLLSSIEMAEFHSTKTSHDQF 30


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 31.9 bits (69), Expect = 0.060
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 81  IQTLIEMGFPKERAEKALAVTNY 149
           +Q L+ MGFP+E+A  AL  TNY
Sbjct: 794 LQELLSMGFPREKAVIALEATNY 816


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 126 FLLVLWENPSRSMSVFLPLFKFANSMFIVK 37
           FL VLW NP   +S+   +     SMF ++
Sbjct: 353 FLWVLWRNPLPQLSIISHIILSPTSMFDIR 382


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 312 KSLKCDECGKLFKNQDEIEYH 374
           K  +C+ C K +KN + ++YH
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYH 417



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +3

Query: 312 KSLKCD--ECGKLFKNQDEIEYH 374
           K  KC    C K +KNQ+ ++YH
Sbjct: 348 KPYKCPVPNCDKAYKNQNGLKYH 370


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 312 KSLKCDECGKLFKNQDEIEYHAAKTNHSS 398
           KS  C EC K FK  + +  H  ++ H+S
Sbjct: 421 KSFVCPECSKKFKRSEHLRRH-IRSLHTS 448


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 78  EIQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPSNS 227
           ++QT+IE     +  ++ L+ T    +EP  E L+  +    +  EP N+
Sbjct: 379 QVQTIIEQSIQVDGYDEPLSTTTPTLIEPIQETLMTQSP--IIECEPFNT 426


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 153 PYNWSRLKLFLLVLWEN-PSRSMSVFLPLFKFANSMFIVKLATFYFQF 13
           P  W +LK  +++LW++ P+ S  + +   + + +M++ K  T   +F
Sbjct: 344 PTEWDKLKPTIILLWKDFPNYSTLLSIMQERNSKAMYMYKPVTSSIRF 391


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +3

Query: 108 PKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPSNSQAGESSA 248
           P  RA + L  +N     PAME L   A  LA+ S+P  S    SSA
Sbjct: 304 PPFRASEPLPSSNIIP-NPAMERLKNGASKLAIESQPFKSAEPLSSA 349


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 150 YNWSRLKLFLLVLWENPSRSMSVFLPLFKFANSMFIVKLATFYFQF*SLL 1
           +N ++  L   +++  P+ + S +   F+F  +MFI+ L  F F   +LL
Sbjct: 506 FNTTKGALVRSMIFPKPT-NFSFYRDSFRFITAMFIIALIGFVFSSINLL 554


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 513 FLSLLFPYA-FVSFSLLGAPVAPSFPL 436
           FL+ LF ++ +V F  LGAPVA +  L
Sbjct: 262 FLNYLFVWSPWVGFGFLGAPVAVALTL 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,042
Number of Sequences: 5004
Number of extensions: 28696
Number of successful extensions: 84
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)