Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    43   2e-04
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398...    41   7e-04
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313...    37   0.011
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    34   0.080
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711...    30   0.98 
08_01_0281 - 2290348-2290637,2290846-2291032                           29   2.3  
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    28   5.2  
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384...    27   6.9  
05_03_0674 - 16842301-16842320,16842651-16842714,16842843-168429...    27   9.1  

>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
            3973665-3973982,3974565-3974763,3974937-3975202,
            3975288-3975574,3976714-3977818,3977900-3978046,
            3978146-3978226,3978315-3978540,3978622-3978761,
            3979539-3979645,3979739-3979841
          Length = 3638

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +3

Query: 75   AEIQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAED 197
            + I T++EMGF + RAE+AL       VE A +WL +H E+
Sbjct: 1208 SSIATIVEMGFSRARAEEALRSVRTNSVEMATDWLFSHPEE 1248


>01_01_0543 +
           3985771-3985866,3985965-3986145,3986668-3986780,
           3986854-3987190,3987602-3987603,3987661-3987743,
           3988017-3988116,3988330-3988463,3988711-3988788,
           3989333-3989387,3990159-3990239,3990369-3990567,
           3990609-3990699,3990770-3990892,3991440-3991528,
           3992450-3992539,3992619-3992792,3992911-3993035,
           3993246-3993372,3993826-3993998
          Length = 816

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 81  IQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPS-NSQAGESS 245
           +  L  MGF     +KA   T+  GVE AM WLL+H +D  ++   S +SQA E +
Sbjct: 636 VSQLASMGFNYLHCQKAAISTSNTGVEEAMNWLLSHMDDPDINDPISKDSQAAEQT 691



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 22/56 (39%), Positives = 33/56 (58%)
 Frame = +3

Query: 60  QT*IMAEIQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPSNS 227
           QT     +QTL+  GF ++ A KALA +    +E A +W+ +H E  A SS P++S
Sbjct: 690 QTVDETSVQTLVSFGFQEDVARKALAASG-GNIERATDWIFSHPE--AFSSVPTDS 742


>02_03_0351 +
           18030656-18030823,18030963-18031113,18031214-18031309,
           18032027-18032103,18032627-18032706,18033216-18033276,
           18034153-18034220,18034312-18034393,18034552-18034638,
           18035009-18035086,18035336-18035455,18035554-18035730
          Length = 414

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 315 SLKCDECGKLFKNQDEIEYHAAKTNHSSF 401
           SL+C +CG L ++ +E + HA  TNH++F
Sbjct: 5   SLRCGDCGVLLRSVEEAQAHAEATNHANF 33



 Score = 31.9 bits (69), Expect = 0.32
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 315 SLKCDECGKLFKNQDEIEYHAAKTNHSSF 401
           +L C  CGK  ++Q E++ H  +T H+ F
Sbjct: 42  NLVCAACGKPCRSQTEVDLHTKRTGHTEF 70



 Score = 31.1 bits (67), Expect = 0.56
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 99  MGFPKERAEKALAVTNYKGVEPAMEWLLAHAED 197
           MGF   RA +AL  +    +E A+ WL  H ED
Sbjct: 124 MGFTTARATRALHFSGNSTIEGAINWLSEHQED 156


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 99  MGFPKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEP 218
           MGFP  R+ +AL  +    +E A+ WLL H  D  +   P
Sbjct: 17  MGFPTARSIRALHFSGNSSLESAINWLLEHENDPDIDQLP 56


>01_06_1061 -
           34169469-34169624,34170837-34170938,34171029-34171180,
           34172087-34172153,34172239-34172419,34172655-34172778,
           34174775-34174871,34175929-34176331,34176729-34176888,
           34177412-34177486,34177714-34177892,34178224-34178303,
           34178561-34179322
          Length = 845

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 75  AEIQTLIEMGFPKERAEKALAVTNY 149
           + I TL+ MGF +  A +ALA+TNY
Sbjct: 806 SSIATLVSMGFDRGSAIRALALTNY 830


>08_01_0281 - 2290348-2290637,2290846-2291032
          Length = 158

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 201 RGPRREPKATPWQALHP 151
           R PRR+    PWQA+HP
Sbjct: 88  RRPRRQHHGRPWQAIHP 104


>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 324 CDECGKLFKNQDEIEYHAA 380
           C +CG++F   D +E+H A
Sbjct: 243 CSQCGEVFNKADSLEHHQA 261


>03_06_0670 +
           35434203-35434355,35436601-35436729,35436978-35438409,
           35438524-35439014
          Length = 734

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +2

Query: 350 KSR*D*VPRRKNESQ*FLRVY*RKKTIN*RGKEGATGAPRRENE 481
           KSR D V R +NE     +        N RG+EG + AP  ENE
Sbjct: 182 KSREDLVTRTQNEKGTTNQSVQNFSVSNQRGREGFSAAPALENE 225


>05_03_0674 -
           16842301-16842320,16842651-16842714,16842843-16842983,
           16843382-16843515,16844437-16844501,16844886-16844923,
           16845029-16845148,16846129-16846458
          Length = 303

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 111 WENPSRSMSVFLPLFKFANSMFIVKLATFY 22
           W++ S +  VFL L +F N++ ++ L  +Y
Sbjct: 224 WDSMSGARHVFLLLCQFVNNLEVIHLPVYY 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,228,528
Number of Sequences: 37544
Number of extensions: 174057
Number of successful extensions: 416
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)