Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305B01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical ... 55 3e-08
AF067936-7|AAC19215.1| 316|Caenorhabditis elegans Hypothetical ... 33 0.094
AF519108-1|AAM74222.1| 909|Caenorhabditis elegans EOR-1 protein. 31 0.66
AF502568-1|AAM74151.1| 909|Caenorhabditis elegans EOR-1 protein. 31 0.66
AF100669-8|AAK39268.1| 909|Caenorhabditis elegans Egl-1 suppres... 31 0.66
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 29 2.7
AF000194-1|AAK39376.4| 386|Caenorhabditis elegans Hypothetical ... 28 4.7
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 28 4.7
AC006614-2|AAF39763.1| 254|Caenorhabditis elegans Drosophila od... 27 6.2
Z47070-1|CAA87340.1| 516|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical ... 27 8.1
>AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical
protein F23C8.4 protein.
Length = 299
Score = 55.2 bits (127), Expect = 3e-08
Identities = 36/110 (32%), Positives = 54/110 (49%)
Frame = +3
Query: 72 MAEIQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPSNSQAGESSAP 251
M+ Q L++MGFP ++AE A N + ++ A++W+ +D A P + A +AP
Sbjct: 1 MSIAQQLMDMGFPADKAEAAAG--NNRNLDQALDWI---EKDGA--GVPMETDAPAQAAP 53
Query: 252 VXXXXXXXXXXXXXXXXXXXKSLKCDECGKLFKNQDEIEYHAAKTNHSSF 401
S KCD+CGKL N D I +HA+KT H +F
Sbjct: 54 ---------GAADSGAPPVAASFKCDDCGKLLANDDAIMFHASKTKHENF 94
>AF067936-7|AAC19215.1| 316|Caenorhabditis elegans Hypothetical
protein C24G6.8 protein.
Length = 316
Score = 33.5 bits (73), Expect = 0.094
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 LIEMGFPKERAEKALAVTNYKGVEPAMEWLL--AHAEDLAVSSEPSNSQAGESSAPV 254
L+++GF + A AL TN GVE A+ W++ ++ D S S ++A E V
Sbjct: 137 LLDLGFDEYTAVLALKRTNSAGVEQAVAWIVERSNESDFDEDSSSSENEADEEMGAV 193
>AF519108-1|AAM74222.1| 909|Caenorhabditis elegans EOR-1 protein.
Length = 909
Score = 30.7 bits (66), Expect = 0.66
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 312 KSLKCDECGKLFKNQDEIEYHAAKTN 389
+SL C+ECG+ F+ +++H A N
Sbjct: 537 RSLHCEECGRGFQQHSTLDHHVASHN 562
>AF502568-1|AAM74151.1| 909|Caenorhabditis elegans EOR-1 protein.
Length = 909
Score = 30.7 bits (66), Expect = 0.66
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 312 KSLKCDECGKLFKNQDEIEYHAAKTN 389
+SL C+ECG+ F+ +++H A N
Sbjct: 537 RSLHCEECGRGFQQHSTLDHHVASHN 562
>AF100669-8|AAK39268.1| 909|Caenorhabditis elegans Egl-1
suppressor/dio uptake defective/raf enhancer protein 1
protein.
Length = 909
Score = 30.7 bits (66), Expect = 0.66
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 312 KSLKCDECGKLFKNQDEIEYHAAKTN 389
+SL C+ECG+ F+ +++H A N
Sbjct: 537 RSLHCEECGRGFQQHSTLDHHVASHN 562
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 312 KSLKCDECGKLFKNQDEIEYHA 377
K KCD C KLF + E+ HA
Sbjct: 411 KDFKCDTCSKLFFTESELNRHA 432
>Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical
protein F45G2.6 protein.
Length = 462
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 315 SLKCDECGKLFKNQDEIEYHAAK 383
SLKC++CG+ F D +E H AK
Sbjct: 108 SLKCEKCGRQFAKND-LEKHRAK 129
>AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein.
Length = 462
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 315 SLKCDECGKLFKNQDEIEYHAAK 383
SLKC++CG+ F D +E H AK
Sbjct: 108 SLKCEKCGRQFAKND-LEKHRAK 129
>AF000194-1|AAK39376.4| 386|Caenorhabditis elegans Hypothetical
protein ZC328.2 protein.
Length = 386
Score = 27.9 bits (59), Expect = 4.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 312 KSLKCDECGKLFKNQDEIEYH 374
K KC++CG+ F D + H
Sbjct: 273 KPFKCEDCGRFFSRSDHLRTH 293
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = +3
Query: 318 LKCDECGKLFKNQDEIEYHAAKTNHSS 398
L+C++CG F+N+ ++++H + HS+
Sbjct: 200 LECEQCGNEFENELDLDHH-IRREHST 225
>AC006614-2|AAF39763.1| 254|Caenorhabditis elegans Drosophila
odd-skipped-like protein2 protein.
Length = 254
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 324 CDECGKLFKNQDEIEYH 374
CD CGK F+ QD + H
Sbjct: 154 CDVCGKAFRRQDHLRDH 170
>Z47070-1|CAA87340.1| 516|Caenorhabditis elegans Hypothetical
protein T09B9.2 protein.
Length = 516
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 198 GPRREPKATPWQALHPYNWSRLKLFLLVLWENPSRSMSVFLPLF 67
G R K TPW+A+ + + LV E P M FLP F
Sbjct: 257 GKRNNRKNTPWKAIFTSKQVWVAVAALVCHEFPLVIMLQFLPKF 300
>AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical
protein F23H11.2 protein.
Length = 865
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 324 CDECGKLFKNQDEIE 368
CD CG LF+N +E+E
Sbjct: 26 CDRCGALFENFEELE 40
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,076,275
Number of Sequences: 27780
Number of extensions: 155356
Number of successful extensions: 508
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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