Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305B01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   5.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = -3

Query: 123 LLVLWENPSRSMSVFLPLFKFANSMFIVKLATFY 22
           + +L + PSRS ++   L  F+N+++I+ + + +
Sbjct: 544 ITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVH 577


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 315 SLKCDECGKLFKNQDEI 365
           +LKCD+C     N +E+
Sbjct: 147 NLKCDKCSTYQSNGEEV 163


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 235 PACELEGSEDTARSSA*AKSHSMAG 161
           P   LEGS D++   +   SHS  G
Sbjct: 59  PPRSLEGSYDSSSGDSPVSSHSSNG 83


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 321 KCDECGKLFKNQDEIEYH 374
           KCD C + F++  ++  H
Sbjct: 149 KCDVCERAFEHSGKLHRH 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,481
Number of Sequences: 438
Number of extensions: 1873
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)