Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305A11f
(521 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 26 0.18
U09586-2|AAC47271.1| 712|Tribolium castaneum protease, reverse ... 25 0.41
DQ659254-1|ABG47452.1| 431|Tribolium castaneum imaginal disc gr... 23 1.6
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 23 1.6
DQ659251-1|ABG47449.1| 366|Tribolium castaneum chitinase 11 pro... 22 3.8
AF260820-1|AAG02018.1| 139|Tribolium castaneum alpha-esterase l... 22 3.8
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.6
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.6
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.6
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.6
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.6
DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein. 21 8.7
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 26.2 bits (55), Expect = 0.18
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 413 VLTVVMKNWEPLVSAPALAMERTPGPVCLRVKFSSSNLLP*MDFPPVPLWLVKSP 249
VL + M +EP P++ PGP F +N LP PP+PL + +P
Sbjct: 143 VLNLTMPKYEP---NPSII---DPGPALPPAGFLCNNYLPLPQVPPLPLPPIFAP 191
>U09586-2|AAC47271.1| 712|Tribolium castaneum protease, reverse
transcriptase andRNase H protein.
Length = 712
Score = 25.0 bits (52), Expect = 0.41
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +2
Query: 281 ESPSTAISLKTR---ISPLSTLDLASSPWLMPV 370
ESP A L R I +ST+DL SS W +P+
Sbjct: 373 ESPPAADELLRRFHEIRYMSTIDLRSSYWQIPL 405
>DQ659254-1|ABG47452.1| 431|Tribolium castaneum imaginal disc
growth factor 4 protein.
Length = 431
Score = 23.0 bits (47), Expect = 1.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 151 TCENFRALCTGEK 189
T ++FR LCTG K
Sbjct: 408 TLDDFRGLCTGNK 420
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 23.0 bits (47), Expect = 1.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 413 VLTVVMKNWEPLVSAPALAMERTPGPVCLRVKFSSSNLLP*MDFPPVPL 267
VL + M +EP P++ PGP F +N P PP+PL
Sbjct: 143 VLNLTMPKYEP---NPSII---DPGPALPPTGFLCNNYPPLPQVPPLPL 185
>DQ659251-1|ABG47449.1| 366|Tribolium castaneum chitinase 11
protein.
Length = 366
Score = 21.8 bits (44), Expect = 3.8
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 183 ASAQGTEVFTRLGSDVTSQLNNNFSQWGIVNSDVE-EY 73
A G ++L + + S + FSQWG D++ EY
Sbjct: 110 AILNGIVASSKLRASLISSCLSFFSQWGYDGIDIDWEY 147
>AF260820-1|AAG02018.1| 139|Tribolium castaneum alpha-esterase like
protein E1 protein.
Length = 139
Score = 21.8 bits (44), Expect = 3.8
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 235 FMLQGGDFTNHNGTGGKSIYGNKF-EDENFTL 327
F + GGDF G+G +YG + EN L
Sbjct: 78 FWIHGGDFV--TGSGTSEMYGPDYLMSENVVL 107
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +3
Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
C+ WFP HC W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +3
Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
C+ WFP HC W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +3
Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
C+ WFP HC W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +3
Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
C+ WFP HC W
Sbjct: 128 CKIDITWFPFDDQHCDMKFGSW 149
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +3
Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
C+ WFP HC W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149
>DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein.
Length = 822
Score = 20.6 bits (41), Expect = 8.7
Identities = 8/31 (25%), Positives = 15/31 (48%)
Frame = -1
Query: 500 WLPKVSICLTTSMPSTTFPKTTCLPSSQEVL 408
W+P + IC++ P P T + + +L
Sbjct: 478 WMPVMRICVSAWNPKDCDPLITLIETWMPLL 508
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,970
Number of Sequences: 336
Number of extensions: 3344
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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