Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   3.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   3.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   3.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   5.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   5.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   5.8  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +1

Query: 190 GFGYKGSIFHRVIPN 234
           GFGY+ ++ ++V+P+
Sbjct: 389 GFGYESNVKYQVVPS 403


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +1

Query: 190 GFGYKGSIFHRVIPN 234
           GFGY+ ++ ++V+P+
Sbjct: 389 GFGYESNVKYQVVPS 403


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +1

Query: 190 GFGYKGSIFHRVIPN 234
           GFGY+ ++ ++V+P+
Sbjct: 15  GFGYESNVKYQVVPS 29


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 48  ISNVSNLQNHHNDN 7
           ISN+SN  N++N N
Sbjct: 90  ISNISNYNNNNNYN 103


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 330 LKGEILVFKLIAVDGLSPSAVMVGE 256
           L G +  FK++ ++ L+  +V +GE
Sbjct: 55  LAGGLKSFKILPIEPLAVDSVKIGE 79


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 48  ISNVSNLQNHHNDN 7
           ISN+SN  N++N N
Sbjct: 328 ISNISNYNNNNNYN 341


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +3

Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
           C+    WFP    HC      W
Sbjct: 111 CKMDVAWFPFDDQHCDMKFGSW 132


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +3

Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
           C+    WFP    HC      W
Sbjct: 111 CKIDIAWFPFDDQHCDMKFGSW 132


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +3

Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
           C+    WFP    HC      W
Sbjct: 111 CKIDITWFPFDDQHCDMKFGSW 132


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +3

Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
           C+    WFP    HC      W
Sbjct: 111 CKIDIAWFPFDDQHCDMKFGSW 132


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +3

Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
           C+    WFP    HC      W
Sbjct: 111 CKMDIAWFPFDDQHCDMKFGSW 132


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +3

Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
           C+    WFP    HC      W
Sbjct: 111 CKIDITWFPFDDQHCDMKFGSW 132


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 39  VSNLQNHHNDN 7
           +SN+ N++NDN
Sbjct: 90  ISNISNYNNDN 100


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +3

Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
           C+    WFP    HC      W
Sbjct: 179 CKIDITWFPFDDQHCDMKFGSW 200


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +3

Query: 363 CRC*Y*WFPVLHHHCQDLLAGW 428
           C+    WFP    HC      W
Sbjct: 179 CKIDITWFPFDDQHCDMKFGSW 200


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 168 TEVFTRLGSDVTSQL 124
           T+VF R G D  S+L
Sbjct: 46  TQVFNRFGDDTESKL 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,376
Number of Sequences: 438
Number of extensions: 3639
Number of successful extensions: 23
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)