Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   6.8  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   9.0  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    25   9.0  

>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -2

Query: 322 YS*FHINRILRSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQRMQ 152
           Y  +   R+L SGI + HS   + +   KL E +     +L +     K    Q++Q
Sbjct: 357 YEAYRTERLLSSGISQDHSVFREVNPSAKLEEERALHEEKLMKMEAEMKTIFSQKVQ 413


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 127 SIESWLRLPLQVPPP 83
           S +SW  +P Q PPP
Sbjct: 471 SFDSWTAVPYQAPPP 485


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 80  HWWRHLQW 103
           +WWRHL W
Sbjct: 57  NWWRHLNW 64


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 368 ASFFFFFLYQSVRNVLFMISHK 303
           ASFFF FLY  +   L+  S+K
Sbjct: 86  ASFFFIFLYLHIGRGLYYGSYK 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,748
Number of Sequences: 5004
Number of extensions: 30931
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)