Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0421 + 21990034-21990392,21991691-21992681                       31   0.42 
12_01_0347 + 2658545-2659309                                           29   2.3  
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422...    29   2.3  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    28   5.2  
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687...    27   6.9  
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228...    27   6.9  

>01_05_0421 + 21990034-21990392,21991691-21992681
          Length = 449

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = -2

Query: 229 ERQMERHRQLKRPPVRHKRQGQQRMQLIRC*CDGSIE 119
           ++Q + H+ + + P +H++Q QQR QL++  C  +++
Sbjct: 185 QQQQQHHQDVMQSPHQHQQQQQQRQQLVQQNCGYAVK 221


>12_01_0347 + 2658545-2659309
          Length = 254

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 36  AGRHRRGQADTIERTIGGGTCSG 104
           A RHRR   +T  R +GGG C G
Sbjct: 142 ARRHRRWSLETRPRGVGGGCCPG 164


>07_03_0203 +
           15138864-15140452,15140629-15140726,15141924-15142235,
           15142437-15142749,15144025-15146023,15147033-15147068
          Length = 1448

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 102 GNRNQLSILPSHQQRISCIRCCPCRLCRTGGR 197
           GN   LS++PSH     CI C   R+  T  R
Sbjct: 275 GNLKSLSLVPSHSASSKCISCDGLRIVSTPPR 306


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 271 HSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQ 164
           H   G R+RG    E    RH Q ++PP   ++Q Q
Sbjct: 283 HPIHGGRERGSSPAEADHHRHHQQEQPPPPPQQQQQ 318


>06_01_1193 +
           10264360-10264504,10264763-10264910,10268350-10268748,
           10268925-10271214
          Length = 993

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
 Frame = +3

Query: 18  YLSHLCAGRHRRGQADTIERTIGG----GTCSGNRNQLSILPSHQQRISCIRCCPCRLCR 185
           +L +L  GR       T+ R+IG      T + +   ++ LP+   ++ C+R   C    
Sbjct: 604 HLKYLSFGRIFSSCIYTLPRSIGKLHGLQTLNMSSTYIATLPTEISKLQCLRTLRCTRVS 663

Query: 186 TGGRFS------CLCRSICLSGSF 239
               FS      CL  ++CL   F
Sbjct: 664 NNNNFSINHPVKCLTNTMCLPNIF 687


>06_01_0318 -
           2284481-2284594,2285340-2286044,2286589-2286609,
           2287186-2287257,2287762-2287842,2288059-2288133,
           2288197-2288484
          Length = 451

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 292 RSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQR 158
           RS  +R+ SR  +RD   +      +R R   R   RH R+ + R
Sbjct: 276 RSSPRRRRSRSHERDHDSERDRSDRDRGRHKDREHDRHAREDRDR 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,568,318
Number of Sequences: 37544
Number of extensions: 225977
Number of successful extensions: 721
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)