Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.082
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               31   0.58 
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)                      29   1.8  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    28   4.1  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   5.4  
SB_36744| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_30492| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)                   27   7.1  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_20802| Best HMM Match : Phage_integr_N (HMM E-Value=1.2)            27   9.4  

>SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -2

Query: 280 KRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQRMQ 152
           +RQ  RQ QR R  +  +RQ +R RQ +R   RH+++ +QR +
Sbjct: 16  QRQRQRQRQRQR-QRQRQRQRQRQRQRQRQRQRHRQRQRQRQR 57



 Score = 33.9 bits (74), Expect = 0.082
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -2

Query: 280 KRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQRMQ 152
           +RQ  RQ QR R  +  +RQ +RHRQ +R   R +++ +QR +
Sbjct: 26  QRQRQRQRQRQR-QRQRQRQRQRHRQRQRQRQRQRQRQRQRQR 67



 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -2

Query: 280 KRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQRMQ 152
           +RQ  RQ QR R  +  +RQ +R RQ +R   R +++ +QR++
Sbjct: 50  QRQRQRQRQRQR-QRQRQRQRQRQRQRQRQRQRQRQRQRQRLR 91



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 280 KRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQRMQ 152
           +RQ  RQ QR R  +  +RQ +R RQ +R   R + + +QR++
Sbjct: 56  QRQRQRQRQRQR-QRQRQRQRQRQRQRQRQRQRQRLRQRQRLR 97



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -2

Query: 280 KRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQR 158
           +RQ  RQ QR R  +  +RQ +R RQ +R   R +++ QQR
Sbjct: 68  QRQRQRQRQRQR-QRQRQRQRQRLRQRQRLRQRQRQRQQQR 107


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -2

Query: 292 RSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQRMQ 152
           RSG +   S      R  +  ER M R R  +RPP R +R    R Q
Sbjct: 398 RSGSREGKSEDNSSLRRSRSRERNMARDRDDRRPPSRSRRDSSLRRQ 444


>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 697

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -2

Query: 310 HINRILRSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQRMQ 152
           H+ +  +   +R    Q Q+ +  +  ++++++ RQL+    RH +Q QQR Q
Sbjct: 231 HLQQHRQQQQQRLDRHQQQQGQQQQQQQQRLQQRRQLRERQQRHLQQQQQRQQ 283


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 277 RQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQRMQ 152
           +Q SR GQ+ + P  PE+Q ++  +  +PP +  R  QQ  Q
Sbjct: 587 QQPSRPGQQHQQPFRPEQQPQQPFRSVQPPQQPFRADQQTQQ 628


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -2

Query: 307  INRILRSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQRMQLIR 143
            + + +R  ++R+  R G+R R  +       + R+  R   RHKR  Q+R++  R
Sbjct: 1163 LRQFVRRAVRRRVRRVGRRFRRKRRRRLIRRKTRRFARRVQRHKRNLQKRLRRAR 1217


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 96  CSGNRNQLSILPSHQQRISCIRCCPCRLCRTGGRFSCLCR 215
           C+     LS+L S  QR  C+R CP R  R     S +C+
Sbjct: 397 CTRCNPPLSLL-STGQRAQCVRTCPFRFSRMNVNGSFVCQ 435


>SB_36744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +3

Query: 129 PSHQQRISCIRCCPCRLCRTGGRFSCLCRSI---CLSGSFG 242
           P  ++   C+R CP    R   R +C+ + +   C+S +FG
Sbjct: 8   PFRKENRGCVRSCPMDKHRVETREACVSKGLIEGCVSSAFG 48


>SB_30492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 96  CSGNRNQLSILPSHQQRISCIRCC-PCRLCRTGGR 197
           C  N+NQ+  + SH   I C+  C P  +C    R
Sbjct: 84  CDLNQNQVQTIGSHDDPIRCVDYCQPLGVCAAEAR 118


>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
          Length = 587

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 114 QLSILPSHQQRISCIRCCPC----RLCRTGGRFSCLCRSICLSG 233
           Q + L  H ++ +C +C        +C   GRF+CL  + C+SG
Sbjct: 323 QTASLIQHYRKQTCPKCYQKPDDPAICLVCGRFTCLQGTCCMSG 366


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 280  KRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQ 161
            ++QH +Q Q D+  +  ++Q +RH Q ++    H +Q QQ
Sbjct: 1095 QQQHDQQQQHDQQQQHDQQQQQRHDQQQQ---HHDQQQQQ 1131


>SB_20802| Best HMM Match : Phage_integr_N (HMM E-Value=1.2)
          Length = 566

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 256 QRDRGPKLPERQMERHRQLKR 194
           +R  GP+L +R ME+H +LKR
Sbjct: 464 RRAMGPQLQKRLMEKHVELKR 484


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,104
Number of Sequences: 59808
Number of extensions: 249551
Number of successful extensions: 856
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)