Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80840-11|AAB37935.3|  392|Caenorhabditis elegans Hypothetical p...    29   2.7  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    28   3.5  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    28   3.5  
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso...    28   4.7  
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso...    28   4.7  
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso...    28   4.7  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      27   6.2  
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    27   8.1  

>U80840-11|AAB37935.3|  392|Caenorhabditis elegans Hypothetical
           protein F08D12.12 protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 301 RILRSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPP 188
           R L+ G+K Q S     ++  K P+  M+  R+L +PP
Sbjct: 98  RFLKRGVKSQLSNSSSAEQCGKPPDPTMKNIRELLQPP 135


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 277 RQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQR 158
           R+      R R P+  +R+  R R    PP R  R G  R
Sbjct: 91  RERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDR 130


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 277 RQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQR 158
           R+      R R P+  +R+  R R    PP R  R G  R
Sbjct: 91  RERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDR 130


>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform a
           protein.
          Length = 4488

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 298 ILRSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQ 170
           +    +  QH RQ Q  R  +L + Q ++H+Q ++ P   ++Q
Sbjct: 177 VTHQNLYEQHRRQQQLIREQQLYQHQHQQHQQQQQQPQEQQQQ 219


>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform d
           protein.
          Length = 4369

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 298 ILRSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQ 170
           +    +  QH RQ Q  R  +L + Q ++H+Q ++ P   ++Q
Sbjct: 177 VTHQNLYEQHRRQQQLIREQQLYQHQHQQHQQQQQQPQEQQQQ 219


>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform c
           protein.
          Length = 4447

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 298 ILRSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQ 170
           +    +  QH RQ Q  R  +L + Q ++H+Q ++ P   ++Q
Sbjct: 177 VTHQNLYEQHRRQQQLIREQQLYQHQHQQHQQQQQQPQEQQQQ 219


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 39  GRHRRGQADTIERTIGGGTCSGNRNQLSILPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 218
           G++  G A    +   G TC  + N L I P+  +   C R C       G R  C C S
Sbjct: 722 GKYGYGCALDCPKCASGSTCD-HINGLCICPAGLEGALCTRPCSAGFWGNGCRQVCRCTS 780


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 39  GRHRRGQADTIERTIGGGTCSGNRNQLSILPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 218
           G++  G A    +   G TC  + N L I P+  +   C R C       G R  C C S
Sbjct: 722 GKYGYGCALDCPKCASGSTCD-HINGLCICPAGLEGALCTRPCSAGFWGNGCRQVCRCTS 780


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 39  GRHRRGQADTIERTIGGGTCSGNRNQLSILPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 218
           G++  G A    +   G TC  + N L I P+  +   C R C       G R  C C S
Sbjct: 722 GKYGYGCALDCPKCASGSTCD-HINGLCICPAGLEGALCTRPCSAGFWGNGCRQVCRCTS 780


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 39  GRHRRGQADTIERTIGGGTCSGNRNQLSILPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 218
           G++  G A    +   G TC  + N L I P+  +   C R C       G R  C C S
Sbjct: 722 GKYGYGCALDCPKCASGSTCD-HINGLCICPAGLEGALCTRPCSAGFWGNGCRQVCRCTS 780


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 20
           protein.
          Length = 1254

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 292 RSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRP 191
           R  + +Q   QGQ+  GP+ P  Q  + RQL  P
Sbjct: 760 RMAMFQQQQAQGQQPGGPQQPMGQWPQQRQLPVP 793


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,702,586
Number of Sequences: 27780
Number of extensions: 188098
Number of successful extensions: 621
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)