Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38270.1 68417.m05406 glycosyl transferase family 8 protein c...    28   3.3  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    28   3.3  
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    27   7.7  
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p...    27   7.7  
At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family...    27   7.7  

>At4g38270.1 68417.m05406 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 680

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 271 HSRQGQRDRGP-KLPERQMERHRQLKRPPVRHKRQGQQRMQLIR 143
           HS   Q D    + P        +LKR  +R +R+GQ+ ++LIR
Sbjct: 131 HSTTNQTDESENQFPNVDFASPAKLKRQILRQERRGQRTLELIR 174


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 123 LRAGCGYHCRCRHQWCAQ 70
           LR GCG+H RC  + C +
Sbjct: 454 LRYGCGFHYRCHEKGCEE 471


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -2

Query: 277 RQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQR 158
           R  SR   R R P+ P     R+R     P   +R G  R
Sbjct: 154 RSRSRSISRSRSPRRPSDSRSRYRSRSYSPAPRRRGGPPR 193


>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
           protein contains Pfam profile PF03371: PRP38 family
          Length = 355

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 262 QGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQR 158
           + + D+  K PER+ ER R  +R   RH+ +   R
Sbjct: 205 EDEMDQRRKSPERERERDRDRRRDSHRHRDRDYDR 239


>At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family
           protein identical to proline-rich protein 2 [Arabidopsis
           thaliana] gi|7620011|gb|AAF64549
          Length = 321

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 218 HLPLW*LRPPISLPLPAMLPFNTRPQNPVY 307
           H+P + L PP++LP P   P   +P  P+Y
Sbjct: 160 HMPKFPLPPPLNLP-PLTFPKIKKPCPPIY 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,159,402
Number of Sequences: 28952
Number of extensions: 174136
Number of successful extensions: 478
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)