Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A08f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q74G81 Cluster: Transcriptional regulator, putative; n=...    35   0.98 
UniRef50_A0Y2P7 Cluster: Putative decarboxylase; n=1; Alteromona...    33   4.0  
UniRef50_Q012U7 Cluster: Chromosome 08 contig 1, DNA sequence; n...    33   4.0  
UniRef50_Q8NA70 Cluster: Protein FAM47B; n=3; Homo/Pan/Gorilla g...    33   4.0  
UniRef50_UPI00005846A7 Cluster: PREDICTED: similar to RIKEN cDNA...    32   9.2  
UniRef50_Q5ZPC5 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  
UniRef50_Q41805 Cluster: Extensin-like protein precursor; n=15; ...    32   9.2  
UniRef50_A7P131 Cluster: Chromosome chr19 scaffold_4, whole geno...    32   9.2  
UniRef50_Q5KSV5 Cluster: Transglutaminase; n=2; Physarum polycep...    32   9.2  
UniRef50_Q4N0V7 Cluster: Putative uncharacterized protein; n=5; ...    32   9.2  

>UniRef50_Q74G81 Cluster: Transcriptional regulator, putative; n=3;
           Geobacter|Rep: Transcriptional regulator, putative -
           Geobacter sulfurreducens
          Length = 306

 Score = 35.1 bits (77), Expect = 0.98
 Identities = 22/52 (42%), Positives = 27/52 (51%)
 Frame = -1

Query: 356 RYPRLITENTITIVNELIVDYIYILRDYEASSTARAQSAPPTSPRCPRARLR 201
           RYP +  +N   +   L V    ILR  EA+  A A+ APP  P  PR RLR
Sbjct: 55  RYPSVKRDNAEKLAQALEVSLEDILRREEAAEDAPAEVAPPEPP--PRRRLR 104


>UniRef50_A0Y2P7 Cluster: Putative decarboxylase; n=1;
           Alteromonadales bacterium TW-7|Rep: Putative
           decarboxylase - Alteromonadales bacterium TW-7
          Length = 512

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 410 HVNYFHKHRVQQTTTCPTRYPRLITENTITIVN 312
           H  YFH  R      CP  YP ++ E+ I  +N
Sbjct: 95  HAVYFHHPRYMAHLNCPVTYPAVVAEHIIAAIN 127


>UniRef50_Q012U7 Cluster: Chromosome 08 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 08 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 136

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = -1

Query: 395 HKHRVQQTTTCPTRYPRLITENTITIVNELIVDYIYILRDYEASSTARAQSAPPTSPRCP 216
           H HRV          PR++      I+  +I   I I+     SS AR  + PP S R  
Sbjct: 55  HHHRVSPVVGVTHAAPRVVIHPIEVIIKVIIKVIIIIIILAHPSSPARVFAHPPASHRRS 114

Query: 215 RARLR 201
           RAR R
Sbjct: 115 RARPR 119


>UniRef50_Q8NA70 Cluster: Protein FAM47B; n=3; Homo/Pan/Gorilla
           group|Rep: Protein FAM47B - Homo sapiens (Human)
          Length = 645

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 243 RPSNLAPLPPSTSPRHVRAEPSKTTIN 163
           R S+L P PP T   H+R EPSKT ++
Sbjct: 291 RVSHLHPEPPETGVSHLRPEPSKTQVS 317


>UniRef50_UPI00005846A7 Cluster: PREDICTED: similar to RIKEN cDNA
           0610037P05 gene; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to RIKEN cDNA 0610037P05 gene -
           Strongylocentrotus purpuratus
          Length = 303

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -1

Query: 356 RYPRLITENTITIVNELIVDYIYILRDYEASSTARAQSAPPTSP 225
           R P+L  EN +  +NELI +Y+   R    SS   A+S  PT+P
Sbjct: 168 RKPQLSNENML--INELIREYLEFNRYKYTSSVLLAESGQPTTP 209


>UniRef50_Q5ZPC5 Cluster: Putative uncharacterized protein; n=1;
           Angiococcus disciformis|Rep: Putative uncharacterized
           protein - Angiococcus disciformis
          Length = 746

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 268 PRPLH-ELSPPLQPRPAAPEHVSAPR 194
           PRPL    SPP +PRPAAP   + PR
Sbjct: 69  PRPLRPSRSPPSRPRPAAPSAGACPR 94


>UniRef50_Q41805 Cluster: Extensin-like protein precursor; n=15;
           Magnoliophyta|Rep: Extensin-like protein precursor - Zea
           mays (Maize)
          Length = 1188

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 268 PRPLHELSPPLQPRPAA-PEHVSAPRE 191
           P P    SPPL P+PA+ P HVS+P E
Sbjct: 850 PPPAPVSSPPLTPKPASPPAHVSSPPE 876


>UniRef50_A7P131 Cluster: Chromosome chr19 scaffold_4, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr19 scaffold_4, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 102

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 238 LQPRPAAPEHVSAPRESRTIKDYYKY 161
           + PRPA PE V  P ESRT++   +Y
Sbjct: 13  MPPRPAVPEEVPLPEESRTVELRRRY 38


>UniRef50_Q5KSV5 Cluster: Transglutaminase; n=2; Physarum
           polycephalum|Rep: Transglutaminase - Physarum
           polycephalum (Slime mold)
          Length = 855

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 268 PRPLHELSPPLQPRPAAPEHVSAPRESRTI 179
           P P HE+ PP+ P P AP   ++P+  ++I
Sbjct: 174 PPPTHEVPPPVVPTPVAPSAPASPQVIQSI 203


>UniRef50_Q4N0V7 Cluster: Putative uncharacterized protein; n=5;
           Theileria parva|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 529

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 268 PRPLHELSPPLQPRPAAPEHVSAPRESRTIKDYYK 164
           P P + + PP+QP PAAP   +  +E  T K   K
Sbjct: 290 PPPTYYVPPPMQPAPAAPSQPTDTQEKVTTKRIVK 324


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 416,202,353
Number of Sequences: 1657284
Number of extensions: 7063600
Number of successful extensions: 31925
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31811
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)