Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A08f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   1.6  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.2  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.2  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   2.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.8  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 283 CETMRPRPLHELSPPLQPRPAAP 215
           C+  RP PL + +  L PR  +P
Sbjct: 185 CDPDRPLPLDQKARDLSPRNGSP 207


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 274 MRPRPLHELSPPLQPRPAAPEH 209
           MR   +H LS   QP+P  P +
Sbjct: 176 MRQHVMHNLSSVPQPQPVLPTY 197


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 274 MRPRPLHELSPPLQPRPAAPEH 209
           MR   +H LS   QP+P  P +
Sbjct: 176 MRQHVMHNLSSVPQPQPVLPTY 197


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 274 MRPRPLHELSPPLQPRPAAPEH 209
           MR   +H LS   QP+P  P +
Sbjct: 176 MRQHVMHNLSSVPQPQPVLPTY 197


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
 Frame = -2

Query: 268 PRPLHELSPP------LQPRPAAPEHVSAP 197
           P P H L P       LQP+  AP H+ +P
Sbjct: 60  PAPGHGLQPTMGDYTQLQPQRLAPTHLQSP 89


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 244 PPLQPRPAAPEH 209
           PPL P P  P H
Sbjct: 115 PPLTPSPGPPSH 126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,929
Number of Sequences: 336
Number of extensions: 2044
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)