Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    29   0.32 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   0.73 
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   6.8  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    25   6.8  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    25   9.0  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   9.0  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   9.0  

>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 271 RPRPLHELSPPLQPRPAA-PEHVSAPRES 188
           +PR    +S PL P P +  EHVS PRES
Sbjct: 164 KPRKKVPVSHPLPPTPPSREEHVSVPRES 192


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 262  PLHELS-PPLQPRPAAPEHVSAP 197
            P H +S PP++P+ AAP  +SAP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAP 1705


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 268 PRPLHELSPPLQPRPAAPEHVSAPRE 191
           PR     +PP+ P P  P+++SA  E
Sbjct: 262 PRRSVSSTPPVHPPPPVPQNLSAVNE 287


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 203 GDVLGGSGARLEGRTELVQWTRPHS 277
           G V+  S  + E  TEL +W++ HS
Sbjct: 30  GTVVFASARKPEAATELQEWSKSHS 54


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 242 RTELVQWTRPHSLAIYKCNQ 301
           R++++ W  PH   +  CNQ
Sbjct: 111 RSDILVWVLPHQFVVRICNQ 130


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -1

Query: 449 MEFISSPT*NLNSHVNYFHKHRVQQTTTCPTRYPRLITENTITIVNEL--IVDYIYILRD 276
           +E   +P+  +++ V+ FH  +  Q     T +P  +T    T +NE     D +YI   
Sbjct: 212 IEKSKNPSILVDACVSRFHIQQETQDFIDATHFPTYVTPMGKTAINESSPYFDGVYIGSL 271

Query: 275 YEASSTARAQS 243
            E S   RA+S
Sbjct: 272 TEPSIKERAES 282


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 253 ELSPPLQPRPAAPEHV 206
           ++SPP++P P +PE +
Sbjct: 226 KMSPPVEPDPPSPEEI 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,382
Number of Sequences: 5004
Number of extensions: 29851
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)