Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305A08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 31 0.74
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 29 1.7
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160 29 3.0
03_02_1007 + 13160772-13161311 28 4.0
02_05_0868 + 32342967-32343915,32344389-32344447 28 4.0
09_06_0127 + 21019266-21019670 27 6.9
01_06_1319 - 36267285-36267992 27 6.9
01_06_0287 + 28224956-28225216,28225385-28225641,28225789-282258... 27 6.9
12_02_0233 - 16023062-16023253,16023528-16023609,16023699-160238... 27 9.1
08_02_0350 + 16123139-16124041 27 9.1
02_05_0312 - 27792127-27792360,27793282-27793412,27793534-27793837 27 9.1
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 30.7 bits (66), Expect = 0.74
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 288 YIARL*GLVHCTSSVRPSNLAPLPPSTSPRHVRAEPSK 175
++ RL +V CT+S P P PP SP+ A+P+K
Sbjct: 107 HVRRLLDIVACTASFGPP--PPPPPPPSPKDAAADPAK 142
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 271 RPRPLHELSPPLQPRPAAPEHVSAPRESRTIKDYYKYD 158
+P+P S PLQP P P+H + P Y YD
Sbjct: 62 QPQPYAHHSAPLQPYPPPPQHHAYPPPQPHPPSPYVYD 99
>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
Length = 306
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 268 PRPLHELSPPLQPRPAAPEHVSAPRESRT 182
P PL E PP+ RP P V P + T
Sbjct: 118 PPPLAETPPPMNERPPTPPPVQPPPDRET 146
>03_02_1007 + 13160772-13161311
Length = 179
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 277 TMRPRPLHELSPPLQPRPAAPEHVSAPRESRTIKDYYKY 161
T+RP P SP P PAAP VS +R YY Y
Sbjct: 3 TVRPHPPAPPSPVQAPAPAAPPPVSV--AARPQAPYYYY 39
>02_05_0868 + 32342967-32343915,32344389-32344447
Length = 335
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 289 IYCETMRPRPLHELSPPLQPRPAAPEHVSAP 197
++C R LHE+ PP +P P P P
Sbjct: 39 VFCPRCFGRFLHEIDPPPRPAPPPPHFFPQP 69
>09_06_0127 + 21019266-21019670
Length = 134
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 268 PRPLHELSPPLQPRPAAPEHVSAPRESR 185
P P +PP PRPAA E RE R
Sbjct: 77 PPPTPTAAPPPLPRPAAAESTVVVREER 104
>01_06_1319 - 36267285-36267992
Length = 235
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 389 HRVQQTTTCPTRYPRLITENTITIVN 312
HR +TCPTR PR E + +++
Sbjct: 26 HRPDGLSTCPTRAPRAALEEIVEVMD 51
>01_06_0287 +
28224956-28225216,28225385-28225641,28225789-28225899,
28225926-28226021,28226078-28226134,28226348-28226438,
28226610-28226678,28227091-28227180,28227390-28227440,
28227535-28227753,28228064-28228127,28228211-28228299
Length = 484
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 441 YIITNLKFKLARQLFP*TQSTTDYYLSYK 355
Y+++NL+ +L R+ P T D SYK
Sbjct: 223 YLLSNLRIRLGRKWMPMTNRLNDIQQSYK 251
>12_02_0233 -
16023062-16023253,16023528-16023609,16023699-16023809,
16023890-16024141,16024227-16024580,16024893-16025548,
16025554-16026459,16026550-16026747
Length = 916
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 247 SPPLQPRPAAPEHVSAP 197
+PPL P P +P H S+P
Sbjct: 567 APPLPPEPPSPRHPSSP 583
>08_02_0350 + 16123139-16124041
Length = 300
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 267 LVHCTSSVRPSNLAPLPPSTSPRHVRAEPS 178
L C+ + P+ L P PP SPR R PS
Sbjct: 247 LTSCSRPLPPALLPPPPPPLSPRPSRWYPS 276
>02_05_0312 - 27792127-27792360,27793282-27793412,27793534-27793837
Length = 222
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 293 IYILRDYEASSTARAQSAPPTSPRCPRARLR 201
+++ + TARA+S P SP P RLR
Sbjct: 7 LFLASPVATAPTARARSTPSASPARPSLRLR 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,176,436
Number of Sequences: 37544
Number of extensions: 200104
Number of successful extensions: 1128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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