Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)               32   0.25 
SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)                   30   1.3  
SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                28   5.4  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               27   7.1  
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               27   7.1  
SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                 27   9.4  

>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
          Length = 1066

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -2

Query: 280 ETMRPRPLHELSPPLQPRPAAPEHVSAPRESRTIKDYYK 164
           E + PRP    SP  QP PA PE  +AP  S  + D  K
Sbjct: 787 EPLAPRPS---SPQTQPAPAPPEPAAAPTSSNDVPDSSK 822


>SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)
          Length = 169

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 271 RPRPLHELSPPLQPRPAAPEHVSAPRESRTIKDY 170
           RPRP ++  PP + RP  P     P ESR    Y
Sbjct: 35  RPRPPYDDRPPSESRPRPPYDERPPSESRPRPPY 68


>SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 772

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 286 YCETMRPRP-LHELSPPLQPRPAAPEHVSAPRESRTIKDYYK 164
           Y  +MR  P   E + P  P P    ++S   ESR ++D+ K
Sbjct: 614 YTPSMRAPPGTPEATTPSDPPPDTKRYISPTEESRRMRDFEK 655


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 283 CETMRPRPLHELSPPLQPRPAAPEHVSAPRESRTIK 176
           C T  P   +  SPP +P PAAP   S+   SR IK
Sbjct: 126 CLTRGPSEDNRSSPPRRPPPAAPHRTSS--LSRKIK 159


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -3

Query: 255 TSSVRPSNLAPLPPSTSPRHVRAEPSK 175
           TSS +PS LA  PPS S  HV   PS+
Sbjct: 523 TSSKKPSPLATKPPS-SAGHVNPPPSR 548


>SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 943

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 268 PRPLHELSPPLQPRPAAPEHVSAPRESRTIK 176
           P+P     P   P PA  +HVS P+     K
Sbjct: 883 PKPTTTPPPTAPPEPATKKHVSQPKPKHVAK 913


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,900,005
Number of Sequences: 59808
Number of extensions: 225440
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)