Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A08f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF033104-1|AAB95091.3| 1924|Drosophila melanogaster 89B helicase...    28   8.8  
AE014297-2129|AAF55260.2| 1929|Drosophila melanogaster CG4261-PA...    28   8.8  

>AF033104-1|AAB95091.3| 1924|Drosophila melanogaster 89B helicase
           protein.
          Length = 1924

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -3

Query: 267 LVHCTSSVRPSNLAPLPPSTSPRHVRAEP 181
           L H TSSVR S L  L   TS   V++EP
Sbjct: 571 LSHSTSSVRRSTLKTLMTLTSADRVKSEP 599


>AE014297-2129|AAF55260.2| 1929|Drosophila melanogaster CG4261-PA
           protein.
          Length = 1929

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -3

Query: 267 LVHCTSSVRPSNLAPLPPSTSPRHVRAEP 181
           L H TSSVR S L  L   TS   V++EP
Sbjct: 577 LSHSTSSVRRSTLKTLMTLTSADRVKSEP 605


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,922,125
Number of Sequences: 53049
Number of extensions: 335900
Number of successful extensions: 1522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)