Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305A08f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 29 2.7
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 29 2.7
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 29 2.7
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 29 2.7
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 28 3.5
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 28 3.5
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 28 3.5
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 28 3.5
Z49911-9|CAA90133.1| 682|Caenorhabditis elegans Hypothetical pr... 28 4.7
U53155-3|AAC48267.3| 492|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z96048-5|CAB09422.1| 443|Caenorhabditis elegans Hypothetical pr... 27 6.2
M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF273808-1|AAG15157.1| 442|Caenorhabditis elegans nuclear recep... 27 6.2
AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical ... 27 8.1
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 407 VNYFHKHRVQQTTTCPTRYPRLITENTITIVNELIVDY 294
V Y +R++ CP PR ++ + +T+ N +DY
Sbjct: 1941 VGYDISYRLKHRLACPEEEPRDVSRDFVTVYNHKDLDY 1978
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 407 VNYFHKHRVQQTTTCPTRYPRLITENTITIVNELIVDY 294
V Y +R++ CP PR ++ + +T+ N +DY
Sbjct: 1941 VGYDISYRLKHRLACPEEEPRDVSRDFVTVYNHKDLDY 1978
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 407 VNYFHKHRVQQTTTCPTRYPRLITENTITIVNELIVDY 294
V Y +R++ CP PR ++ + +T+ N +DY
Sbjct: 1941 VGYDISYRLKHRLACPEEEPRDVSRDFVTVYNHKDLDY 1978
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 407 VNYFHKHRVQQTTTCPTRYPRLITENTITIVNELIVDY 294
V Y +R++ CP PR ++ + +T+ N +DY
Sbjct: 1941 VGYDISYRLKHRLACPEEEPRDVSRDFVTVYNHKDLDY 1978
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 271 RPRPLHELSPPLQPRPAAPEHVSAPRESRTIKDYY 167
RP P ELSPP PRP P E+R + Y
Sbjct: 149 RPPPPVELSPP--PRPPPPPEYDEEEETRAFWERY 181
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 271 RPRPLHELSPPLQPRPAAPEHVSAPRESRTIKDYY 167
RP P ELSPP PRP P E+R + Y
Sbjct: 790 RPPPPVELSPP--PRPPPPPEYDEEEETRAFWERY 822
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 271 RPRPLHELSPPLQPRPAAPEHVSAPRESRTIKDYY 167
RP P ELSPP PRP P E+R + Y
Sbjct: 790 RPPPPVELSPP--PRPPPPPEYDEEEETRAFWERY 822
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 271 RPRPLHELSPPLQPRPAAPEHVSAPRESRTIKDYY 167
RP P ELSPP PRP P E+R + Y
Sbjct: 790 RPPPPVELSPP--PRPPPPPEYDEEEETRAFWERY 822
>Z49911-9|CAA90133.1| 682|Caenorhabditis elegans Hypothetical
protein M28.7 protein.
Length = 682
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 271 RPRPLHELSPPLQPRPAAPEHVSAPRESRTIKDYYKYD 158
+P+P + QP+P P ++ P ES+T+ + + D
Sbjct: 155 QPQPPQQQHQQPQPKPRQPITITKPLESKTLNERQELD 192
>U53155-3|AAC48267.3| 492|Caenorhabditis elegans Hypothetical
protein ZC513.5 protein.
Length = 492
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 407 VNYFHKHRVQQTTTCPTRYPRLI-TENTITIVN 312
VN FH+++++++ P YP +I TE + + N
Sbjct: 456 VNSFHQYKIKKSRQFPWIYPEIIYTEKAVVLKN 488
>Z96048-5|CAB09422.1| 443|Caenorhabditis elegans Hypothetical
protein F57A10.5 protein.
Length = 443
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 253 ELSPPLQPRPAAPEHVSAPRESRTIKDYYKYD*IT 149
+L PP P+P +P + S+ IK ++ Y+ +T
Sbjct: 229 QLGPPRLPKPPSPGKPRDSQHSQNIKQWFFYNLLT 263
>M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical
protein B0303.7 protein.
Length = 493
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 262 PLHELSPPLQPRPAAPEHVSAPRESRTIKDY 170
PL E L PRPAAP S+ + I DY
Sbjct: 252 PLKEAFTALPPRPAAPSGSSSGTYATAIYDY 282
>AF273808-1|AAG15157.1| 442|Caenorhabditis elegans nuclear receptor
NHR-60 protein.
Length = 442
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 253 ELSPPLQPRPAAPEHVSAPRESRTIKDYYKYD*IT 149
+L PP P+P +P + S+ IK ++ Y+ +T
Sbjct: 228 QLGPPRLPKPPSPGKPRDSQHSQNIKQWFFYNLLT 262
>AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical
protein C54G6.2 protein.
Length = 700
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 256 HELSPPLQPRPAAPEHVSAPRE 191
H PP QPR +AP H P +
Sbjct: 92 HRYHPPRQPRSSAPTHHRVPAD 113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,797,983
Number of Sequences: 27780
Number of extensions: 173373
Number of successful extensions: 726
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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