Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    28   4.4  
At5g28823.1 68418.m03544 hypothetical protein                          27   7.7  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    27   7.7  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    27   7.7  

>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = -3

Query: 297 LHLYIARL*GLVHCTSSVRPS----NLAPLPPSTSP 202
           LHL IA L  +   +SS+ PS    +L+P PPS+SP
Sbjct: 10  LHLSIAILLFITTSSSSLSPSSSSPSLSPSPPSSSP 45


>At5g28823.1 68418.m03544 hypothetical protein
          Length = 568

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = -2

Query: 247 SPPLQPRPAAPEHVSAPR----ESRTIKDYY 167
           SPP+ P P  P  +SA R     SR+I+DY+
Sbjct: 43  SPPVNPPPNTPLILSAARIGLSNSRSIQDYF 73


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 247 SPPLQPRPAAPEHVSAPRESRT 182
           SPP  P P+ P H S P  + T
Sbjct: 60  SPPYDPSPSTPSHPSPPSHTPT 81


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 247 SPPLQPRPAAPEHVSAPRESRT 182
           SPP  P P+ P H S P  + T
Sbjct: 60  SPPYDPSPSTPSHPSPPSHTPT 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,971,625
Number of Sequences: 28952
Number of extensions: 154342
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)